TY - JOUR AU - Hoepfner, D. AU - Schildknegt, D. AU - Braakman, I. AU - Philippsen, P. AU - Tabak, H. F. PY - 2005 DA - 2005// TI - Contribution of the endoplasmic reticulum to peroxisome formation JO - Cell VL - 122 UR - https://doi.org/10.1016/j.cell.2005.04.025 DO - 10.1016/j.cell.2005.04.025 ID - Hoepfner2005 ER - TY - JOUR AU - Wanders, R. J. AU - Vreken, P. AU - Ferdinandusse, S. AU - Jansen, G. A. AU - Waterham, H. R. AU - van Roermund, C. W. AU - Van Grunsven, E. G. PY - 2001 DA - 2001// TI - Peroxisomal fatty acid alpha- and beta-oxidation in humans: enzymology, peroxisomal metabolite transporters and peroxisomal diseases JO - Biochem Soc Trans VL - 29 UR - https://doi.org/10.1042/bst0290250 DO - 10.1042/bst0290250 ID - Wanders2001 ER - TY - JOUR AU - Sztriha, L. AU - Al-Gazali, L. I. AU - Wanders, R. J. AU - Ofman, R. AU - Nork, M. AU - Lestringant, G. G. PY - 2000 DA - 2000// TI - Abnormal myelin formation in rhizomelic chondrodysplasia punctata type 2 (DHAPAT-deficiency) JO - Dev Med Child Neurol VL - 42 UR - https://doi.org/10.1017/S0012162200000918 DO - 10.1017/S0012162200000918 ID - Sztriha2000 ER - TY - JOUR AU - Schrader, M. AU - Fahimi, H. D. PY - 2006 DA - 2006// TI - Peroxisomes and oxidative stress JO - Biochim Biophys Acta VL - 1763 UR - https://doi.org/10.1016/j.bbamcr.2006.09.006 DO - 10.1016/j.bbamcr.2006.09.006 ID - Schrader2006 ER - TY - JOUR AU - Rottensteiner, H. AU - Kramer, A. AU - Lorenzen, S. AU - Stein, K. AU - Landgraf, C. AU - Volkmer-Engert, R. AU - Erdmann, R. PY - 2004 DA - 2004// TI - Peroxisomal membrane proteins contain common Pex19p-binding sites that are an integral part of their targeting signals JO - Mol Biol Cell VL - 15 UR - https://doi.org/10.1091/mbc.E04-03-0188 DO - 10.1091/mbc.E04-03-0188 ID - Rottensteiner2004 ER - TY - JOUR AU - Mukai, S. AU - Fujiki, Y. PY - 2006 DA - 2006// TI - Molecular mechanisms of import of peroxisome-targeting signal type 2 (PTS2) proteins by PTS2 receptor Pex7p and PTS1 receptor Pex5pL JO - J Biol Chem VL - 281 UR - https://doi.org/10.1074/jbc.M607178200 DO - 10.1074/jbc.M607178200 ID - Mukai2006 ER - TY - JOUR AU - Swinkels, B. W. AU - Gould, S. J. AU - Subramani, S. PY - 1992 DA - 1992// TI - Targeting efficiencies of various permutations of the consensus C-terminal tripeptide peroxisomal targeting signal JO - FEBS Lett VL - 305 UR - https://doi.org/10.1016/0014-5793(92)80880-P DO - 10.1016/0014-5793(92)80880-P ID - Swinkels1992 ER - TY - JOUR AU - Neuberger, G. AU - Maurer-Stroh, S. AU - Eisenhaber, B. AU - Hartig, A. AU - Eisenhaber, F. PY - 2003 DA - 2003// TI - Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences JO - J Mol Biol VL - 328 UR - https://doi.org/10.1016/S0022-2836(03)00318-8 DO - 10.1016/S0022-2836(03)00318-8 ID - Neuberger2003 ER - TY - JOUR AU - Petriv, O. I. AU - Tang, L. AU - Titorenko, V. I. AU - Rachubinski, R. A. PY - 2004 DA - 2004// TI - A new definition for the consensus sequence of the peroxisome targeting signal type 2 JO - J Mol Biol VL - 341 UR - https://doi.org/10.1016/j.jmb.2004.05.064 DO - 10.1016/j.jmb.2004.05.064 ID - Petriv2004 ER - TY - JOUR AU - Wanders, R. J. AU - Waterham, H. R. PY - 2006 DA - 2006// TI - Peroxisomal disorders: the single peroxisomal enzyme deficiencies JO - Biochim Biophys Acta VL - 1763 UR - https://doi.org/10.1016/j.bbamcr.2006.08.010 DO - 10.1016/j.bbamcr.2006.08.010 ID - Wanders2006 ER - TY - JOUR AU - Mohan, K. V. AU - Som, I. AU - Atreya, C. D. PY - 2002 DA - 2002// TI - Identification of a type 1 peroxisomal targeting signal in a viral protein and demonstration of its targeting to the organelle JO - J Virol VL - 76 UR - https://doi.org/10.1128/jvi.76.5.2543-2547.2002 DO - 10.1128/jvi.76.5.2543-2547.2002 ID - Mohan2002 ER - TY - JOUR AU - Cohen, G. B. AU - Rangan, V. S. AU - Chen, B. K. AU - Smith, S. AU - Baltimore, D. PY - 2000 DA - 2000// TI - The human thioesterase II protein binds to a site on HIV-1 Nef critical for CD4 down-regulation JO - J Biol Chem VL - 275 UR - https://doi.org/10.1074/jbc.M000536200 DO - 10.1074/jbc.M000536200 ID - Cohen2000 ER - TY - JOUR AU - Neuberger, G. AU - Kunze, M. AU - Eisenhaber, F. AU - Berger, J. AU - Hartig, A. AU - Brocard, C. PY - 2004 DA - 2004// TI - Hidden localization motifs: naturally occurring peroxisomal targeting signals in non-peroxisomal proteins JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-12-r97 DO - 10.1186/gb-2004-5-12-r97 ID - Neuberger2004 ER - TY - JOUR AU - Kikuchi, M. AU - Hatano, N. AU - Yokota, S. AU - Shimozawa, N. AU - Imanaka, T. AU - Taniguchi, H. PY - 2004 DA - 2004// TI - Proteomic analysis of rat liver peroxisome: presence of peroxisome-specific isozyme of Lon protease JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M305623200 DO - 10.1074/jbc.M305623200 ID - Kikuchi2004 ER - TY - JOUR AU - Kurochkin, I. V. AU - Nagashima, T. AU - Konagaya, A. AU - Schönbach, C. PY - 2005 DA - 2005// TI - Sequence-based discovery of the human and rodent peroxisomal proteome JO - Appl Bioinformatics VL - 4 UR - https://doi.org/10.2165/00822942-200504020-00003 DO - 10.2165/00822942-200504020-00003 ID - Kurochkin2005 ER - TY - JOUR AU - Hawkins, J. AU - Mahony, D. AU - Maetschke, S. AU - Wakabayashi, M. AU - Teasdale, R. D. AU - Bodén, M. PY - 2007 DA - 2007// TI - Identifying novel peroxisomal proteins JO - Proteins VL - 69 UR - https://doi.org/10.1002/prot.21420 DO - 10.1002/prot.21420 ID - Hawkins2007 ER - TY - JOUR AU - Nakai, K. AU - Horton, P. PY - 1999 DA - 1999// TI - PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization JO - Trends Biochem Sci VL - 24 UR - https://doi.org/10.1016/S0968-0004(98)01336-X DO - 10.1016/S0968-0004(98)01336-X ID - Nakai1999 ER - TY - JOUR AU - Guda, C. AU - Subramaniam, S. PY - 2005 DA - 2005// TI - pTARGET [corrected] a new method for predicting protein subcellular localization in eukaryotes JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti650 DO - 10.1093/bioinformatics/bti650 ID - Guda2005 ER - TY - JOUR AU - Neuberger, G. AU - Maurer-Stroh, S. AU - Eisenhaber, B. AU - Hartig, A. AU - Eisenhaber, F. PY - 2003 DA - 2003// TI - Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence JO - J Mol Biol VL - 328 UR - https://doi.org/10.1016/S0022-2836(03)00319-X DO - 10.1016/S0022-2836(03)00319-X ID - Neuberger2003 ER - TY - JOUR AU - Kurochkin, I. V. AU - Mizuno, Y. AU - Konagaya, A. AU - Sakaki, Y. AU - Schönbach, C. AU - Okazaki, Y. PY - 2007 DA - 2007// TI - Novel peroxisomal protease Tysnd1 processes PTS1- and PTS2-containing enzymes involved in beta-oxidation of fatty acids JO - EMBO J VL - 26 UR - https://doi.org/10.1038/sj.emboj.7601525 DO - 10.1038/sj.emboj.7601525 ID - Kurochkin2007 ER - TY - JOUR AU - Rice, P. AU - Longden, I. AU - Bleasby, A. PY - 2000 DA - 2000// TI - EMBOSS: the European Molecular Biology Open Software Suite JO - Trends Genet VL - 16 UR - https://doi.org/10.1016/S0168-9525(00)02024-2 DO - 10.1016/S0168-9525(00)02024-2 ID - Rice2000 ER - TY - JOUR AU - Eddy, S. R. PY - 1998 DA - 1998// TI - Profile hidden Markov models JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.9.755 DO - 10.1093/bioinformatics/14.9.755 ID - Eddy1998 ER - TY - JOUR AU - Hirokawa, T. AU - Boon-Chieng, S. AU - Mitaku, S. PY - 1998 DA - 1998// TI - SOSUI: classification and secondary structure prediction system for membrane proteins JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.4.378 DO - 10.1093/bioinformatics/14.4.378 ID - Hirokawa1998 ER - TY - JOUR AU - Persson, B. AU - Argos, P. PY - 1997 DA - 1997// TI - Prediction of membrane protein topology utilizing multiple sequence alignments JO - J Protein Chem VL - 16 UR - https://doi.org/10.1023/A:1026353225758 DO - 10.1023/A:1026353225758 ID - Persson1997 ER - TY - JOUR AU - Islinger, M. AU - Luers, G. H. AU - Li, K. W. AU - Loos, M. AU - Volkl, A. PY - 2007 DA - 2007// TI - Rat liver peroxisomes after fibrate treatment: A survey using quantitative mass spectrometry JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M610910200 DO - 10.1074/jbc.M610910200 ID - Islinger2007 ER - TY - JOUR AU - Tsukamoto, S. AU - Kanegae, T. AU - Isobe, E. AU - Hirose, M. AU - Shimamura, M. AU - Nagoya, T. PY - 1996 DA - 1996// TI - Effects of bezafibrate on ethanol oxidation in rats JO - Alcohol Clin Exp Res VL - 20 UR - https://doi.org/10.1111/j.1530-0277.1996.tb01704.x DO - 10.1111/j.1530-0277.1996.tb01704.x ID - Tsukamoto1996 ER - TY - JOUR AU - Longmore, G. D. AU - Schachter, H. PY - 1982 DA - 1982// TI - Product-identification and substrate-specificity studies of the GDP-L-fucose:2-acetamido-2-deoxy-beta-D-glucoside (FUC goes to Asn-linked GlcNAc) 6-alpha-L-fucosyltransferase in a Golgi-rich fraction from porcine liver JO - Carbohydr Res VL - 100 UR - https://doi.org/10.1016/S0008-6215(00)81049-6 DO - 10.1016/S0008-6215(00)81049-6 ID - Longmore1982 ER - TY - JOUR AU - Torgan, C. E. AU - Daniels, M. P. PY - 2006 DA - 2006// TI - Calcineurin localization in skeletal muscle offers insights into potential new targets JO - J Histochem Cytochem VL - 54 UR - https://doi.org/10.1369/jhc.5A6769.2005 DO - 10.1369/jhc.5A6769.2005 ID - Torgan2006 ER - TY - JOUR AU - Rachubinski, R. A. AU - Subramani, S. PY - 1995 DA - 1995// TI - How proteins penetrate peroxisomes JO - Cell VL - 83 UR - https://doi.org/10.1016/0092-8674(95)90091-8 DO - 10.1016/0092-8674(95)90091-8 ID - Rachubinski1995 ER - TY - JOUR AU - Schlüter, A. AU - Fourcade, S. AU - Domènech-Estévez, E. AU - Gabaldón, T. AU - Huerta-Cepas, J. AU - Berthommier, G. AU - Ripp, R. AU - Wanders, R. J. AU - Poch, O. AU - Pujol, A. PY - 2007 DA - 2007// TI - PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl935 DO - 10.1093/nar/gkl935 ID - Schlüter2007 ER - TY - JOUR AU - Henikoff, J. G. AU - Henikoff, S. PY - 1996 DA - 1996// TI - Blocks database and its applications JO - Methods Enzymol VL - 266 UR - https://doi.org/10.1016/S0076-6879(96)66008-X DO - 10.1016/S0076-6879(96)66008-X ID - Henikoff1996 ER - TY - JOUR AU - Sprenger, J. AU - Lynn Fink, J. AU - Karunaratne, S. AU - Hanson, K. AU - Hamilton, N. A. AU - Teasdale, R. D. PY - 2008 DA - 2008// TI - LOCATE: a mammalian protein subcellular localization database JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm950 DO - 10.1093/nar/gkm950 ID - Sprenger2008 ER - TY - JOUR AU - Sprenger, J. AU - Fink, J. L. AU - Teasdale, R. D. PY - 2006 DA - 2006// TI - Evaluation and comparison of mammalian subcellular localization prediction methods JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-S5-S3 DO - 10.1186/1471-2105-7-S5-S3 ID - Sprenger2006 ER - TY - JOUR AU - Yu, C. S. AU - Chen, Y. C. AU - Lu, C. H. AU - Hwang, J. K. PY - 2006 DA - 2006// TI - Prediction of protein subcellular localization JO - Proteins VL - 64 UR - https://doi.org/10.1002/prot.21018 DO - 10.1002/prot.21018 ID - Yu2006 ER - TY - CHAP AU - Horton, P. AU - Park, K. -. J. AU - Obayashi, T. AU - Nakai, K. PY - 2006 DA - 2006// TI - Protein Subcellular Localization Prediction with WoLF PSORT BT - Proceedings of the 4th Annual Asia Pacific Bioinformatics Conference APBC06, Taipei, Taiwan ID - Horton2006 ER - TY - JOUR AU - Lu, Z. AU - Szafron, D. AU - Greiner, R. AU - Lu, P. AU - Wishart, D. S. AU - Poulin, B. AU - Anvik, J. AU - Macdonell, C. AU - Eisner, R. PY - 2004 DA - 2004// TI - Predicting subcellular localization of proteins using machine-learned classifiers JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg447 DO - 10.1093/bioinformatics/btg447 ID - Lu2004 ER - TY - JOUR AU - Hoglund, A. AU - Donnes, P. AU - Blum, T. AU - Adolph, H. W. AU - Kohlbacher, O. PY - 2006 DA - 2006// TI - MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino acid composition JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl002 DO - 10.1093/bioinformatics/btl002 ID - Hoglund2006 ER - TY - JOUR AU - Emanuelsson, O. AU - Elofsson, A. AU - von Heijne, G. AU - Cristóbal, S. PY - 2003 DA - 2003// TI - In silico prediction of the peroxisomal proteome in fungi, plants and animals JO - J Mol Biol VL - 330 UR - https://doi.org/10.1016/S0022-2836(03)00553-9 DO - 10.1016/S0022-2836(03)00553-9 ID - Emanuelsson2003 ER - TY - JOUR AU - Kovacs, W. J. AU - Tape, K. N. AU - Shackelford, J. E. AU - Duan, X. AU - Kasumov, T. AU - Kelleher, J. K. AU - Brunengraber, H. AU - Krisans, S. K. PY - 2007 DA - 2007// TI - Localization of the pre-squalene segment of the isoprenoid biosynthetic pathway in mammalian peroxisomes JO - Histochem Cell Biol VL - 127 UR - https://doi.org/10.1007/s00418-006-0254-6 DO - 10.1007/s00418-006-0254-6 ID - Kovacs2007 ER - TY - JOUR AU - Biardi, L. AU - Sreedhar, A. AU - Zokaei, A. AU - Vartak, N. B. AU - Bozeat, R. L. AU - Shackelford, J. E. AU - Keller, G. A. AU - Krisans, S. K. PY - 1994 DA - 1994// TI - Mevalonate kinase is predominantly localized in peroxisomes and is defective in patients with peroxisome deficiency disorders JO - J Biol Chem VL - 269 ID - Biardi1994 ER - TY - JOUR AU - Hogenboom, S. AU - Tuyp, J. J. AU - Espeel, M. AU - Koster, J. AU - Wanders, R. J. AU - Waterham, H. R. PY - 2004 DA - 2004// TI - Mevalonate kinase is a cytosolic enzyme in humans JO - J Cell Sci VL - 117 UR - https://doi.org/10.1242/jcs.00910 DO - 10.1242/jcs.00910 ID - Hogenboom2004 ER - TY - JOUR AU - Olivier, L. M. AU - Chambliss, K. L. AU - Gibson, K. M. AU - Krisans, S. K. PY - 1999 DA - 1999// TI - Characterization of phosphomevalonate kinase: chromosomal localization, regulation, and subcellular targeting JO - J Lipid Res VL - 40 ID - Olivier1999 ER - TY - JOUR AU - Hogenboom, S. AU - Tuyp, J. J. AU - Espeel, M. AU - Koster, J. AU - Wanders, R. J. AU - Waterham, H. R. PY - 2004 DA - 2004// TI - Phosphomevalonate kinase is a cytosolic protein in humans JO - J Lipid Res VL - 45 UR - https://doi.org/10.1194/jlr.M300373-JLR200 DO - 10.1194/jlr.M300373-JLR200 ID - Hogenboom2004 ER - TY - JOUR AU - Luo, B. AU - Norris, C. AU - Bolstad, E. S. AU - Knecht, D. A. AU - Grant, D. F. PY - 2008 DA - 2008// TI - Protein quaternary structure and expression levels contribute to peroxisomal-targeting-sequence-1-mediated peroxisomal import of human soluble epoxide hydrolase JO - J Mol Biol VL - 380 UR - https://doi.org/10.1016/j.jmb.2008.04.064 DO - 10.1016/j.jmb.2008.04.064 ID - Luo2008 ER - TY - JOUR AU - Maynard, E. L. AU - Berg, J. M. PY - 2007 DA - 2007// TI - Quantitative analysis of peroxisomal targeting signal type-1 binding to wild-type and pathogenic mutants of Pex5p supports an affinity threshold for peroxisomal protein targeting JO - J Mol Biol VL - 368 UR - https://doi.org/10.1016/j.jmb.2007.03.005 DO - 10.1016/j.jmb.2007.03.005 ID - Maynard2007 ER - TY - JOUR AU - Birdsey, G. M. AU - Lewin, J. AU - Cunningham, A. A. AU - Bruford, M. W. AU - Danpure, C. J. PY - 2004 DA - 2004// TI - Differential enzyme targeting as an evolutionary adaptation to herbivory in carnivora JO - Mol Biol Evol VL - 21 UR - https://doi.org/10.1093/molbev/msh054 DO - 10.1093/molbev/msh054 ID - Birdsey2004 ER - TY - JOUR AU - Birdsey, G. M. AU - Lewin, J. AU - Holbrook, J. D. AU - Simpson, V. R. AU - Cunningham, A. A. AU - Danpure, C. J. PY - 2005 DA - 2005// TI - A comparative analysis of the evolutionary relationship between diet and enzyme targeting in bats, marsupials and other mammals JO - Proc Biol Sci VL - 272 UR - https://doi.org/10.1098/rspb.2004.3011 DO - 10.1098/rspb.2004.3011 ID - Birdsey2005 ER - TY - JOUR AU - Huber, P. A. AU - Birdsey, G. M. AU - Lumb, M. J. AU - Prowse, D. T. AU - Perkins, T. J. AU - Knight, D. R. AU - Danpure, C. J. PY - 2005 DA - 2005// TI - Peroxisomal import of human alanine:glyoxylate aminotransferase requires ancillary targeting information remote from its C terminus JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M502719200 DO - 10.1074/jbc.M502719200 ID - Huber2005 ER - TY - JOUR AU - Petrova, V. Y. AU - Drescher, D. AU - Kujumdzieva, A. V. AU - Schmitt, M. J. PY - 2004 DA - 2004// TI - Dual targeting of yeast catalase A to peroxisomes and mitochondria JO - Biochem J VL - 380 UR - https://doi.org/10.1042/bj20040042 DO - 10.1042/bj20040042 ID - Petrova2004 ER - TY - JOUR AU - Holbrook, J. D. AU - Birdsey, G. M. AU - Yang, Z. AU - Bruford, M. W. AU - Danpure, C. J. PY - 2000 DA - 2000// TI - Molecular adaptation of alanine:glyoxylate aminotransferase targeting in primates JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026318 DO - 10.1093/oxfordjournals.molbev.a026318 ID - Holbrook2000 ER - TY - JOUR AU - Neuspiel, M. AU - Schauss, A. C. AU - Braschi, E. AU - Zunino, R. AU - Rippstein, P. AU - Rachubinski, R. A. AU - Andrade-Navarro, M. A. AU - McBride, H. M. PY - 2008 DA - 2008// TI - Cargo-selected transport from the mitochondria to peroxisomes is mediated by vesicular carriers JO - Curr Biol VL - 18 UR - https://doi.org/10.1016/j.cub.2007.12.038 DO - 10.1016/j.cub.2007.12.038 ID - Neuspiel2008 ER - TY - JOUR AU - Schumann, U. AU - Subramani, S. PY - 2008 DA - 2008// TI - Special delivery from mitochondria to peroxisomes JO - Trends Cell Biol VL - 17 UR - https://doi.org/10.1016/j.tcb.2008.04.002 DO - 10.1016/j.tcb.2008.04.002 ID - Schumann2008 ER - TY - JOUR AU - Murphy, R. F. PY - 2005 DA - 2005// TI - Location proteomics: a systems approach to subcellular location JO - Biochem Soc Trans VL - 33 UR - https://doi.org/10.1042/BST0330535 DO - 10.1042/BST0330535 ID - Murphy2005 ER - TY - JOUR AU - Sigal, A. AU - Milo, R. AU - Cohen, A. AU - Geva-Zatorsky, N. AU - Klein, Y. AU - Alaluf, I. AU - Swerdlin, N. AU - Perzov, N. AU - Danon, T. AU - Liron, Y. AU - Raveh, T. AU - Carpenter, A. E. AU - Lahav, G. AU - Alon, U. PY - 2006 DA - 2006// TI - Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins JO - Nat Methods VL - 3 UR - https://doi.org/10.1038/nmeth892 DO - 10.1038/nmeth892 ID - Sigal2006 ER - TY - JOUR AU - Stark, C. AU - Breitkreutz, B. J. AU - Reguly, T. AU - Boucher, L. AU - Breitkreutz, A. AU - Tyers, M. PY - 2006 DA - 2006// TI - BioGRID: a general repository for interaction datasets JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj109 DO - 10.1093/nar/gkj109 ID - Stark2006 ER -