Skip to main content

Table 2 List of prediction servers of HLA class II binding peptides, their URLs (as of December 2007), and name abbreviations.

From: Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research

ID Servers Abbreviation URLs Prediction algorithm Reference
1 HLA-DR4Pred (ANN) DR4_ANN [63] ANN [64]
2 HLA-DR4Pred (SVM) DR4_SVM [63] SVM [64]
3 IEDB (ARB) IEDB_II [65] Matrix [66]
4 IEDB (SMM) IEDB_SMM [65] Matrix [41]
5 IEDB (Saturniolo) IEDB_SAT [65] Matrix [67]
6 IEDB (Consensus) IEDB_CON [65] Matrix -
7 MHC Binder Prediction MHC_BP [68] Matrix -
8 MHC2Pred MHC2Pred [69] SVM -
9 MHC-BPS MHC_BPS [70] SVM [71]
10 MHCPred MHCPRED [72] Partial least square [73]
11 Multipred1 (ANN) MULTI_ANN [74] ANN [39]
12 Multipred1 (HMM) MULTI_HMM [74] HMM [39]
13 Multipred1 (SVM) MULTI_SVM [74] SVM [75]
14 NetMHCII NETMHCII [76] Matrix [41]
15 NetMHCIIpan NETMHCIIPAN [77] ANN [29]
16 PeptideCheck (Matrix) PEPC_M [78] Matrix [79]
17 ProPred PROPRED [80] Matrix [81]
18 Rankpep RANKPEP [82] Matrix [83]
19 SVMHC SVMHC [84] Matrix [85]
20 SVRMHC SVRMHC [86] SVM [87]
21 SYFPEITHI SYFPEITHI [88] Matrix [12]