From: Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research
ID | Servers | Abbreviation | URLs | Prediction algorithm | Reference |
---|---|---|---|---|---|
1 | HLA-DR4Pred (ANN) | DR4_ANN | [63] | ANN | [64] |
2 | HLA-DR4Pred (SVM) | DR4_SVM | [63] | SVM | [64] |
3 | IEDB (ARB) | IEDB_II | [65] | Matrix | [66] |
4 | IEDB (SMM) | IEDB_SMM | [65] | Matrix | [41] |
5 | IEDB (Saturniolo) | IEDB_SAT | [65] | Matrix | [67] |
6 | IEDB (Consensus) | IEDB_CON | [65] | Matrix | - |
7 | MHC Binder Prediction | MHC_BP | [68] | Matrix | - |
8 | MHC2Pred | MHC2Pred | [69] | SVM | - |
9 | MHC-BPS | MHC_BPS | [70] | SVM | [71] |
10 | MHCPred | MHCPRED | [72] | Partial least square | [73] |
11 | Multipred1 (ANN) | MULTI_ANN | [74] | ANN | [39] |
12 | Multipred1 (HMM) | MULTI_HMM | [74] | HMM | [39] |
13 | Multipred1 (SVM) | MULTI_SVM | [74] | SVM | [75] |
14 | NetMHCII | NETMHCII | [76] | Matrix | [41] |
15 | NetMHCIIpan | NETMHCIIPAN | [77] | ANN | [29] |
16 | PeptideCheck (Matrix) | PEPC_M | [78] | Matrix | [79] |
17 | ProPred | PROPRED | [80] | Matrix | [81] |
18 | Rankpep | RANKPEP | [82] | Matrix | [83] |
19 | SVMHC | SVMHC | [84] | Matrix | [85] |
20 | SVRMHC | SVRMHC | [86] | SVM | [87] |
21 | SYFPEITHI | SYFPEITHI | [88] | Matrix | [12] |