Table 1 Comparison of MDscan and our program.
From: Extracting transcription factor binding sites from unaligned gene sequences with statistical models
TF | Rank (EBN model) | Rank (PSSM model) | Rank (MDscan) |
|---|---|---|---|
AFT2 | 1 | 1 | 1 |
BAS1 | 1 | 5 | 2 |
CAD1 | 1 | 5 | 4 |
CBF1 | 1 | 2 | 1 |
CIN5 | 1 | 2 | 1 |
FKH2 | 1 | 1 | 3 |
DAL82 | 2 | 1 | N* |
DIG1 | 2 | 3 | 1 |
FKH1 | 1 | 2 | 1 |
GAT1 | 1 | 2 | 2 |
GCN4 | 1 | 1 | 1 |
RPN4 | 1 | 1 | 1 |
GLN3 | 1 | 1 | 1 |
HAP4 | 1 | 3 | 1 |
INO2 | 1 | 2 | 1 |
INO4 | 2 | 2 | 1 |
LEU3 | 1 | 1 | 1 |
MBP1 | 1 | 1 | 2 |
MSN2 | 3 | 3 | 4 |
NRG1 | 1 | 2 | 1 |
PHO2 | 1 | 1 | 2 |
PHO4 | 1 | 2 | 1 |
RCS1 | 1 | 1 | 5 |
RAP1 | 1 | 3 | 2 |
RDS1 | 1 | 1 | 1 |
REB1 | 1 | 3 | 4 |
STE12 | 1 | 2 | 1 |
SWI4 | 3 | 2 | 4 |
TEC1 | 1 | 4 | 1 |
TYE7 | 1 | 1 | 4 |
UME6 | 1 | 1 | 3 |
YAP1 | 1 | 5 | 1 |
YAP7 | 1 | 2 | 1 |
HSF1 | 1 | 1 | 1 |
AZF1 | 1 | 1 | N |
MCM1 | 2 | 2 | N |