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Table 1 Comparison of MDscan and our program.

From: Extracting transcription factor binding sites from unaligned gene sequences with statistical models

TF Rank (EBN model) Rank (PSSM model) Rank (MDscan)
AFT2 1 1 1
BAS1 1 5 2
CAD1 1 5 4
CBF1 1 2 1
CIN5 1 2 1
FKH2 1 1 3
DAL82 2 1 N*
DIG1 2 3 1
FKH1 1 2 1
GAT1 1 2 2
GCN4 1 1 1
RPN4 1 1 1
GLN3 1 1 1
HAP4 1 3 1
INO2 1 2 1
INO4 2 2 1
LEU3 1 1 1
MBP1 1 1 2
MSN2 3 3 4
NRG1 1 2 1
PHO2 1 1 2
PHO4 1 2 1
RCS1 1 1 5
RAP1 1 3 2
RDS1 1 1 1
REB1 1 3 4
STE12 1 2 1
SWI4 3 2 4
TEC1 1 4 1
TYE7 1 1 4
UME6 1 1 3
YAP1 1 5 1
YAP7 1 2 1
HSF1 1 1 1
AZF1 1 1 N
MCM1 2 2 N
  1. * N means that the program predicts no motif.