Table 4 AUC and training time improvement for different models compared to MM1-SVM method for NN269 donor splice sites.
From: Fast splice site detection using information content and feature reduction
Model | SVM kernel | AUC | Training time until convergence (mm.ss) | Performance Improvement | Time Improvement |
|---|---|---|---|---|---|
MM1 SVM | Polynomial | 0.9761 | 10:02 | - | - |
Reduced MM1 SVM (Best in terms of accuracy) | GRBF | 0.9790 | 20:04 | 0.297% | -100% |
Reduced MM1 SVM | Polynomial | 0.9764 | 09:30 | 0.0102% | 5.31% |
IC Shapiro SVM (Best In terms of Time) | Polynomial | 0.9665 | 02:59 | -0.9835% | 70.26% |