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Figure 3 | BMC Bioinformatics

Figure 3

From: VarDetect: a nucleotide sequence variation exploratory tool

Figure 3

Calculation of vicinity peak intensity ratio of the base-call position (arrowed). [2]-vicinity ratio (k = 2) is calculated by normalizing the surrounding signal intensities of two bases left and right of the observed position as described in Equation 2 as follows: Q v 3 MathType@MTEF@5@5@+=feaagaart1ev2aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaemyuae1aa0baaSqaaiabdAha2bqaaiabiodaZaaaaaa@2F96@ = 1/4 × (1 + 0.94 + 1 + 0.97) = 0.977

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