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Table 2 Comparison of the different features between VarDetect, PolyPhred, Genalys, novoSNP and Mutation Surveyor

From: VarDetect: a nucleotide sequence variation exploratory tool

List of different features

VarDetect

PolyPhred

Genalys

novoSNP

Mutation Surveyor

Operating Systems*

All

All

Windows, Mac

Windows, Linux

Windows

Easy installation

Yes

No

Yes

Yes

Yes

Graphical User Interface (GUI)

Yes

w/Consed

Yes

Yes

Yes

Command line interface (CLI)

Yes

Yes

No

No

No

Allele frequency calculation for

Yes

No

Yes

No

No

two-pooled DNA samples

     
  1. (*VarDetect requires Java runtime (JRE) version 1.4 or later)