Table 4 Pattern counting of numeric code shown in Figure 11c. VarDetect selects the highest frequencies (13) to determine number of indel bases.
From: VarDetect: a nucleotide sequence variation exploratory tool
| Â | Pattern Counts | Â | Â | |||
|---|---|---|---|---|---|---|
Pattern | Θ[A] | Θ[C] | Θ[G] | Θ[T] | Total | Comment |
2(1/2) | 4 | 4 | 2 | 3 | 13 | 1 insertion |
2?[1](1/2) | 1 | 2 | 0 | 0 | 3 | 2 insertion |
2?[2](1/2) | 0 | 1 | 0 | 0 | 1 | 3 insertion |
(1/2)2 | 1 | 2 | 0 | 1 | 4 | 1 deletion |
(1/2)?[1]2 | 0 | 1 | 0 | 0 | 1 | 2 deletion |
(1/2)?[2]2 | 1 | 1 | 0 | 3 | 5 | 3 deletion |