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Table 4 Pattern counting of numeric code shown in Figure 11c. VarDetect selects the highest frequencies (13) to determine number of indel bases.

From: VarDetect: a nucleotide sequence variation exploratory tool

  Pattern Counts   
Pattern Θ[A] Θ[C] Θ[G] Θ[T] Total Comment
2(1/2) 4 4 2 3 13 1 insertion
2?[1](1/2) 1 2 0 0 3 2 insertion
2?[2](1/2) 0 1 0 0 1 3 insertion
(1/2)2 1 2 0 1 4 1 deletion
(1/2)?[1]2 0 1 0 0 1 2 deletion
(1/2)?[2]2 1 1 0 3 5 3 deletion