Figure 4
From: CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Smith-Waterman in CUDA running on single and double GPU vs. Farrar's solution. Substitution matrix used: BLOSUM50. Gap-open penalty: 10. Gap-extension penalty: 2.
Database used: SwissProt (Rel. 49.1 – 208,005 proteins and 75,841,138 amino acids).
* Smith-Waterman in CUDA running on an NVidia GeForce 8800 GTX
** Smith-Waterman in CUDA running on two NVidia GeForce 8800 GTX