From: CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Sequence | SW-Cuda* | SW-Cuda** | Ssearch(Fasta) | Blast | |||||
---|---|---|---|---|---|---|---|---|---|
Name | Length | Time (s) | MCUPS | Time (s) | MCUPS | Time (s) | MCUPS | Time (s) | MCUPS |
O29181 | 63 | 2.98 | 1849 | 1.547 | 3561 | 46 | 119 | 3.7 | 1488 |
P03630 | 127 | 5.88 | 1889 | 3.075 | 3612 | 93 | 119 | 5.7 | 1948 |
P53765 | 255 | 12.31 | 1811 | 6.505 | 3428 | 184 | 121 | 11 | 2027 |
Q8ZGB4 | 361 | 17.44 | 1810 | 9.162 | 3446 | 275 | 114 | 16.3 | 1936 |
P58229 | 511 | 24.89 | 1795 | 13.326 | 3353 | 362 | 123 | 16.6 | 2691 |