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Table 1 List of supported tools

From: SNPLims: a data management system for genome wide association studies

Tool

Ref

Description

Plink

[11]

Whole Genome Association Analysis Toolset

eigenstrat

[13]

Software for detecting and correcting for population stratification in genome-wide association studies

structure

[14]

Software package for using multi-locus genotype data to investigate population structure

Fbat

[15]

Software for implementing family-based association tests

WGAViewer

[16]

Software tool for genomic annotation of whole genome association studies

Haploview

[17]

Tool for analysis and visualization of LD and haplotype maps

phase

[18]

Software for haplotype reconstruction, and recombination rate estimation from population data

PedSplit

[19]

Pedigree Management for stratified analysis