From: SNPLims: a data management system for genome wide association studies
Tool | Ref | Description |
---|---|---|
Plink | [11] | Whole Genome Association Analysis Toolset |
eigenstrat | [13] | Software for detecting and correcting for population stratification in genome-wide association studies |
structure | [14] | Software package for using multi-locus genotype data to investigate population structure |
Fbat | [15] | Software for implementing family-based association tests |
WGAViewer | [16] | Software tool for genomic annotation of whole genome association studies |
Haploview | [17] | Tool for analysis and visualization of LD and haplotype maps |
phase | [18] | Software for haplotype reconstruction, and recombination rate estimation from population data |
PedSplit | [19] | Pedigree Management for stratified analysis |