Table 2 List of supported export format
From: SNPLims: a data management system for genome wide association studies
Format | Description |
|---|---|
Quality control and summary statistics | |
gcscore | List of ‘GenCall scores’ of selected samples |
info | Marker information file (Haploview) |
map | Marker information file (PLINK) |
ped | Linkage Pedigree format (Haploview/PLINK) |
Pedallelic/pedgenot | Linkage Pedigree format (StataSE) |
Family based association | |
fbat | Input for implementing family-based association tests (fbat) |
Population Stratification | |
eigenstrat | Input files of genotypes and phenotypes (EIGENSTRAT) |
Haplotyping | |
phase | Input for reconstructing haplotype (phase) |
Annotation | |
wgaviewer | Input for genomic annotation (WGAViewer) |
Others | |
xyraw | Report for Pooling Statistics (R, StataSE) |