Table 1 Test cases
Function | Source | Score | Proximity | Rmsd | PDB | Chain | CATH | Matched Residues |
|---|---|---|---|---|---|---|---|---|
Serine endopeptidases EC 3.4.21 | CSA | 18 | H | H | 1a0j | A | 2.40.10.10 | H57 D102 S195 |
1sca | 3.40.50.200 | H64 D32 S221 | ||||||
1tyf | A | 3.90.226.10 | H122 D171 S97 | |||||
1e5t | A | 3.40.50.1820 | H640 D639 S146 | |||||
WW domain | PROSITE | 9 | H | L | 1eg3 | A | NA | W61 N75 T78 |
1o6w | A | 2.20.70.10 | W4 N18 T21 | |||||
1zcn | A | NA | W11 N26 T29 | |||||
4Fe-4S ferredoxin | PROSITE | 42 | L | L | 1a6l | 3.30.70.20 | C16 C45 C49 C20 P50 P21 C42 | |
1jb0 | C | 1.20.1130.10 | C53 C16 C20 C57 P21 P58 C13 | |||||
1kf6 | B | 3.10.20.30 | C210 C154 C158 C214 P159 P215 C151 | |||||
EF HAND | ELM | 9 | M | H | 1bmo | A | 1.20.238.10 | D257 D259 N260 |
1daq | A | 3.30.60.30 | D40 D44 N42 | |||||
1aj5 | A | 1.10.1330.10 | D227 D229 N230 | |||||
LIMDomain | PROSITE | 12 | H | L | 1a7i | 2.10.110.10 | C10 C13 H31 C34 | |
1wig | A | NA | C34 C37 H56 C59 | |||||
2cuq | A | NA | C18 C21 H38 C41 | |||||
Zn binding | PDBFUN | 45 | H | M | 1a5t | 3.40.50.300 | C62 C65 C50 | |
1a73 | A | 3.90.75.10 | C125 C132 C138 | |||||
1adn | 3.40.10.10 | C72 C69 C38 | ||||||
1adt | NA | C450 C467 C398 | ||||||
1ajy | A | NA | C50 C60 C34 | |||||
1b55 | A | 2.30.29.30 | C155 C154 C165 |