Table 2 Occurrence and distribution of non-coding RNA families in the tomato genome draft sequences.
CHR number | BAC accession number | Matching region | Rfam accession number | RNA family | number of matches |
|---|---|---|---|---|---|
1 | AC171728.2 | 17763::18065 | RF00017 | SRP_euk_srch | 1 |
135747::135317 | RF00005 | tRNA | 1 | ||
1 | AC193777.1 | 99831::99901 | RF00005 | tRNA | 1 |
4 | AC193778.1 | 148954::149035 | RF00005 | tRNA | 1 |
4 | CT990489.3 | 73520:73639 | RF00086 | U27 | 1 |
73740:73863 | RF00016 | U14 | 1 | ||
4 | CU062498.5 | 60943::B1015 | RF00005 | tRNA | 2 |
153111::1S3181 | RF00005 | tRNA | 1 | ||
4 | CU074307.7 | 632:702 | RF00005 | tRNA | 1 |
153112: 153182 | RF00005 | tRNA | 1 | ||
4 | CU074307.9 | 632:702 | RF00005 | tRNA | 1 |
4 | CU074337.8 | 88091::88161 | RF00005 | tRNA | 1 |
4 | CU104691.12 | 51151:51223 | RF00005 | tRNA | 2 |
4 | CU179634.6 | 129509::129931 | RF00177 | SSU_rRNA_5 | 44 |
4 | CU222538.4 | 305::3S6 | RF00005 | tRNA | 1 |
4 | CU222540.3 | 26296::26383 | RF00028 | Intron_qpl | 1 |
4 | CU2BD045.2 | 29885::29958 | RF00005 | tRNA | 7 |
4 | CU302231.4 | 25551::25623 | RF00005 | tRNA | 1 |
4 | CU313315.3 | 39165::39244 | RF00028 | Intron_gpl | 1 |
4 | CU326362.1 | 32386::32465 | RF00028 | Intron_gpl | 1 |
85446::85520 | RF00005 | tRNA | 2 | ||
5 | AC194694.1 | 82814:82839 | RF00451 | mir-395 | 1 |
82977:83070 | RF00451 | mir-395 | 2 | ||
94123::94339 | RF00451 | mir-395 | 1 | ||
7 | AC 187539 1 | 9990::10061 | RF00005 | tRNA | 1 |
7 | AC187540 1 | 88984::89055 | RF00005 | tRNA | 1 |
8 | AP009261.1 | 23923::23995 | RF00005 | tRNA | 1 |
8 | AP009264.1 | 119184:119256 | RF00029 | Intron_gpll | 2 |
123055::123128 | RF00029 | Intron_gpll | 1 | ||
123711-123782 | RF00029 | Intron_gpll | 1 | ||
8 | AP009267.1 | 105178::105257 | RF00028 | Intron_gpl | 1 |
8 | AP009274.1 | 90899::90976 | RF00005 | tRNA | 1 |
8 | AP009279.1 | 27381::27454 | RF00005 | tRNA | 1 |
8 | AP008280.1 | 44680::44752 | RF00005 | tRNA | 1 |
8 | AP009281 1 | 43139:43211 | RF00005 | tRNA | 2 |
8 | AP009284.1 | 1962:2157 | RF00004 | U2 | 1 |
121585::121656 | RF00005 | tRNA | 1 | ||
8 | AP0D9287.1 | 17284::17354 | RF00005 | tRNA | 1 |
8 | AP009327.1 | 44492::44572 | RF00005 | tRNA | 1 |
8 | AP009330 1 | 141496::141567 | RF00029 | Intron_gpll | 1 |
142150::142223 | RF00029 | Intron_gpll | 1 | ||
146022:146094 | RF00029 | Intron_gpll | 2 | ||
8 | AP009357.1 | 44492::44572 | RF00005 | tRNA | 1 |
8 | AP009360.1 | 141496::141567 | RF00029 | Intron_gpll | 1 |
142150::142223 | RF00029 | Intron_qpll | 1 | ||
146022::146094 | RF00029 | Intron_qpll | 2 | ||
10 | AC171731.1 | 9631::9728 | RF0G003 | U1 | 1 |
10 | AC193781.1 | 49869::49939 | RF00005 | tRNA | 1 |