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Table 2 Occurrence and distribution of non-coding RNA families in the tomato genome draft sequences.

From: ISOL@: an Italian SOLAnaceae genomics resource

CHR number BAC accession number Matching region Rfam accession number RNA family number of matches
1 AC171728.2 17763::18065 RF00017 SRP_euk_srch 1
   135747::135317 RF00005 tRNA 1
1 AC193777.1 99831::99901 RF00005 tRNA 1
4 AC193778.1 148954::149035 RF00005 tRNA 1
4 CT990489.3 73520:73639 RF00086 U27 1
   73740:73863 RF00016 U14 1
4 CU062498.5 60943::B1015 RF00005 tRNA 2
   153111::1S3181 RF00005 tRNA 1
4 CU074307.7 632:702 RF00005 tRNA 1
   153112: 153182 RF00005 tRNA 1
4 CU074307.9 632:702 RF00005 tRNA 1
4 CU074337.8 88091::88161 RF00005 tRNA 1
4 CU104691.12 51151:51223 RF00005 tRNA 2
4 CU179634.6 129509::129931 RF00177 SSU_rRNA_5 44
4 CU222538.4 305::3S6 RF00005 tRNA 1
4 CU222540.3 26296::26383 RF00028 Intron_qpl 1
4 CU2BD045.2 29885::29958 RF00005 tRNA 7
4 CU302231.4 25551::25623 RF00005 tRNA 1
4 CU313315.3 39165::39244 RF00028 Intron_gpl 1
4 CU326362.1 32386::32465 RF00028 Intron_gpl 1
   85446::85520 RF00005 tRNA 2
5 AC194694.1 82814:82839 RF00451 mir-395 1
   82977:83070 RF00451 mir-395 2
   94123::94339 RF00451 mir-395 1
7 AC 187539 1 9990::10061 RF00005 tRNA 1
7 AC187540 1 88984::89055 RF00005 tRNA 1
8 AP009261.1 23923::23995 RF00005 tRNA 1
8 AP009264.1 119184:119256 RF00029 Intron_gpll 2
   123055::123128 RF00029 Intron_gpll 1
   123711-123782 RF00029 Intron_gpll 1
8 AP009267.1 105178::105257 RF00028 Intron_gpl 1
8 AP009274.1 90899::90976 RF00005 tRNA 1
8 AP009279.1 27381::27454 RF00005 tRNA 1
8 AP008280.1 44680::44752 RF00005 tRNA 1
8 AP009281 1 43139:43211 RF00005 tRNA 2
8 AP009284.1 1962:2157 RF00004 U2 1
   121585::121656 RF00005 tRNA 1
8 AP0D9287.1 17284::17354 RF00005 tRNA 1
8 AP009327.1 44492::44572 RF00005 tRNA 1
8 AP009330 1 141496::141567 RF00029 Intron_gpll 1
   142150::142223 RF00029 Intron_gpll 1
   146022:146094 RF00029 Intron_gpll 2
8 AP009357.1 44492::44572 RF00005 tRNA 1
8 AP009360.1 141496::141567 RF00029 Intron_gpll 1
   142150::142223 RF00029 Intron_qpll 1
   146022::146094 RF00029 Intron_qpll 2
10 AC171731.1 9631::9728 RF0G003 U1 1
10 AC193781.1 49869::49939 RF00005 tRNA 1
  1. In a row are reported: the chromosome number; the BAC GenBank accession number; the start/end positions for the BAC regions covered by the RNAs; the Rfam accession number; a brief description of the RNA family; the total number of Rfam sequences per BAC region.