Table 1 The ESTree db statistics on sequences. Comparison of the main statistics on the ESTree db version VI, compared with the previously described version III.
From: Version VI of the ESTree db: an improved tool for peach transcriptome analysis
ESTree III | ESTree VI | |
|---|---|---|
Total nr of seq | 18,630 | 75,404 |
Total nr of contigs | 2,328 | 7,709 |
Average alignment depth | 5 | 7.1 |
Total nr of singletons | 6,891 | 20,682 |
Total nr of unigenes | 9,219 | 28,391 |
In-house produced seq | 6,157 | 10,847 |
Total almond seq | - | 3,864 |
Total peach seq | 18,630 | 71,540 |
Pp mesocarp seq | 18,630 | 55,996 |
Pp skin seq | - | 4,690 |
Pp shoot seq | - | 7,085 |
Pp leaf seq | - | 3,769 |
NCBI annotated seq (%) | 70.4 | 78.6 |
GO annotated seq (%) | 49.9 | 69.7 |
Genomic annotated seq (%) | - | 26.8 |
Repeats-containing seq (%) | - | 16 |
Putative SNP-containing seq (%) | 12.7 | 22.9 |
PROSITE patterns-containing seq (%) | - | 18 |
Mapped sequences | - | 0.75 |
Seq associated to microarray data (%) | - | 6.2 |
Metabolic pathways-associated seq (%) | 1,8 | 0.62 |