Skip to main content

Table 1 NER evaluation.

From: Assessment of disease named entity recognition on a corpus of annotated sentences

   OMIM Annotated TP Precision Recall F-measure
  D look-up 908 1063 584 54.94 64.32 59.26
Exact boundary Statistical 908 1051 274 26.07 30.18 27.97
  MetaMap 908 873 273 31.27 30.07 30.66
  D look-up 908 1063 598 56.26 65.86 60.68
Left alignment Statistical 908 1051 390 39.86 38.33 39.08
  MetaMap 908 873 348 37.11 42.95 39.82
  D look-up 908 1063 685 64.44 75.44 69.51
Right alignment Statistical 908 1051 439 53.49 51.43 52.44
  MetaMap 908 873 467 41.77 48.35 44.82
This table shows the result of NER. For each alingment and method, first we show how many diseases are annotated in the corpus (OMIM) then the total number of annotation done by the method and then how many of them agreed with the benchmark (TP).
\