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Table 3 Entities in the NF-kB pathway, the GENIA version

From: New challenges for text mining: mapping between text and manually curated pathways

Id

Name

Biomolecule

State (attributes)

I1

p105

p105

 

I2

p50

p50

 

I3

p65

p65

 

I4

NF-kB

p50/p65

Cytoplasm

I5

active NF-kB

p50/p65

Active, Nucleus

I6

IkBa

IkBa

 

I7

Complex(NF-kB/IkBa)

p50/p65/IkBa

 

I8

Complex(NF-kB/IkBa) IkBa S32P S36P

p50/p65/IkBa

Phosphorylated

I9

Complex(NF-kB/IkBa) IkBa S32P S36P Ub

p50/p65/IkBa

Phosphorylated, Ubiquitinated,

I10

kB site

kB site

 

I11

Complex (NF-kB/kB site)

NF-kB/kB site

 

I12

NFKB1

NFKB1

 

I13

IKBA

IKBA

 

I14

IKK complex

IKK complex

 

I15

26S proteasome

26S proteasome

 
  1. The second column shows the name of each entity given by the biologist who created the pathway model. The biomolecules corresponding to each entity is given in the third column. The last column gives the state of each entity, which is represented as a set of predicates.