TY - BOOK AU - Chinchor, N. PY - 1997 DA - 1997// TI - MUC-7 Named-Entity task Definition ID - Chinchor1997 ER - TY - JOUR AU - Collier, N. AU - Nazarenko, A. AU - Baud, R. AU - Ruch, P. PY - 2006 DA - 2006// TI - Recent advances in natural language processing for biomedical applications JO - Int J Med Inform VL - 75 UR - https://doi.org/10.1016/j.ijmedinf.2005.06.008 DO - 10.1016/j.ijmedinf.2005.06.008 ID - Collier2006 ER - TY - STD TI - Ehrler F, Gobeill J, Tbahriti I, Ruch P: GeneTeam Site Report for BioCreative II: Customizing a Simple Toolkit for Text Mining in Molecular Biology.Proceedings of BioCreative II ID - ref3 ER - TY - CHAP AU - Goldstein, J. AU - Kantrowitz, M. AU - Mittal, V. AU - Carbonell, J. PY - 1999 DA - 1999// BT - Summarizing Text Documents ID - Goldstein1999 ER - TY - JOUR AU - Ehrler, F. AU - Geissbühler, A. AU - Jimeno, A. AU - Ruch, P. PY - 2005 DA - 2005// TI - Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S23 DO - 10.1186/1471-2105-6-S1-S23 ID - Ehrler2005 ER - TY - CHAP AU - Strube, M. AU - Hahn, U. PY - 1996 DA - 1996// TI - Functional Centering BT - ACL ID - Strube1996 ER - TY - JOUR AU - Paice, C. PY - 1990 DA - 1990// TI - Constructing Literature Abstracts by Computer: Techniques and Prospects JO - Inform Proc Manag VL - 26 UR - https://doi.org/10.1016/0306-4573(90)90014-S DO - 10.1016/0306-4573(90)90014-S ID - Paice1990 ER - TY - CHAP AU - Kupiec, J. AU - Pedersen, J. AU - Chen, F. PY - 1995 DA - 1995// TI - A Trainable Document Summarizer BT - SIGIR ID - Kupiec1995 ER - TY - CHAP AU - Teufel, S. AU - Moens, M. PY - 1999 DA - 1999// TI - Argumentative Classification of Extracted Sentences as a First Step Towards Flexible Abstracting BT - Advances in Automatic Text Summarization ID - Teufel1999 ER - TY - JOUR AU - Bourne, P. PY - 2005 DA - 2005// TI - Will a biological database be different from a biological journal? JO - PLoS Comput Biol VL - 1 ID - Bourne2005 ER - TY - BOOK AU - Bairoch, A. PY - 1997 DA - 1997// TI - Proteome Research: new frontiers in functional genomics ID - Bairoch1997 ER - TY - CHAP AU - Blaschke, C. AU - Andrade, M. AU - Ouzounis, C. AU - Valencia, A. PY - 1999 DA - 1999// TI - Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions BT - ISMB ID - Blaschke1999 ER - TY - JOUR AU - Blaschke, C. AU - Leon, E. AU - Krallinger, M. AU - Valencia, A. PY - 2005 DA - 2005// TI - Evaluation of BioCreAtIvE assessment of task 2 JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S16 DO - 10.1186/1471-2105-6-S1-S16 ID - Blaschke2005 ER - TY - CHAP AU - Hersh, W. AU - Cohen, A. AU - Rekapalli, H. AU - Roberts, P. PY - 2007 DA - 2007// TI - TREC 2006 Genomics Track Overview BT - TREC, NIST ID - Hersh2007 ER - TY - JOUR AU - Shah, P. AU - Perez-Iratxeta, C. AU - Bork, P. AU - Andrade, M. PY - 2003 DA - 2003// TI - Information extraction from full text scientific articles: Where are the keywords? JO - BMC Bioinformatics VL - 4 UR - https://doi.org/10.1186/1471-2105-4-20 DO - 10.1186/1471-2105-4-20 ID - Shah2003 ER - TY - CHAP AU - Hakenberg, J. AU - Rutsch, J. AU - Leser, U. PY - 2005 DA - 2005// TI - Tuning text classification for hereditary diseases with section weighting BT - SMBM Proceedings ID - Hakenberg2005 ER - TY - CHAP AU - Mizuta, Y. AU - Collier, N. PY - 2004 DA - 2004// TI - Zone Identification in Biology Articles as a Basis for Information Extraction BT - COLING Workshop on Natural Language Processing in Biomedicine and its Applications (NLPBA/BioNLP) ID - Mizuta2004 ER - TY - CHAP AU - Lisacek, F. AU - Chichester, C. AU - Kaplan, A. AU - Sandor, A. PY - 2005 DA - 2005// TI - Discovering Paradigm Shift Patterns in Biomedical Abstracts: Application to Neurodegenerative Diseases BT - SMBM Proceedings ID - Lisacek2005 ER - TY - JOUR AU - Tbahriti, I. AU - Chichester, C. AU - Lisacek, F. AU - Ruch, P. PY - 2006 DA - 2006// TI - Using argumentation to retrieve articles with similar citations: an inquiry into improving related articles search in the MEDLINE digital library JO - Int J Med Inf VL - 75 UR - https://doi.org/10.1016/j.ijmedinf.2005.06.007 DO - 10.1016/j.ijmedinf.2005.06.007 ID - Tbahriti2006 ER - TY - CHAP AU - Ruch, P. AU - Tbahriti, I. AU - Gobeill, J. AU - Aronson, A. PY - 2006 DA - 2006// TI - Argumentative Feedback: A Linguistically-Motivated Term Expansion for Information Retrieval BT - ACL ID - Ruch2006 ER - TY - CHAP AU - Hersh, W. AU - Bhupatiraju, B. PY - 2004 DA - 2004// TI - TREC Genomics Track Overview BT - TREC-2003 ID - Hersh2004 ER - TY - CHAP AU - Lewis, D. PY - 1995 DA - 1995// TI - Evaluating and Optimizing Autonomous Text Classification Systems BT - ISMB ID - Lewis1995 ER - TY - CHAP AU - Larkey, L. AU - Croft, W. PY - 1996 DA - 1996// TI - Combining Classifiers in Text Categorization BT - SIGIR ID - Larkey1996 ER - TY - CHAP AU - Reynar, J. AU - Ratnaparkhi, A. PY - 1997 DA - 1997// TI - A Maximum Entropy Approach to Identifying Sentence Boundaries BT - ANLP ID - Reynar1997 ER - TY - CHAP AU - Ruch, P. AU - Baud, R. AU - Bouillon, P. AU - Robert, G. PY - 2000 DA - 2000// TI - Minimal Commitment and Full Lexical Disambiguation: Balancing Rules and Hidden Markov Models BT - CoNLL-2000 ID - Ruch2000 ER - TY - CHAP AU - Orasan, C. PY - 2001 DA - 2001// TI - Patterns in Scientific Abstracts BT - Proceedings Corpus Linguistics ID - Orasan2001 ER - TY - BOOK AU - Swales, J. PY - 1990 DA - 1990// TI - Genre Analysis: English in Academic and Research Settings ID - Swales1990 ER - TY - CHAP AU - Langley, P. AU - Iba, W. AU - Thompson, K. PY - 1992 DA - 1992// TI - An Analysis of Bayesian Classifiers BT - AAAI ID - Langley1992 ER - TY - CHAP AU - Yang, Y. AU - Pedersen, J. PY - 1997 DA - 1997// TI - A Comparative Study on Feature Selection in Text Categorization BT - 412-420 ID - Yang1997 ER - TY - JOUR AU - Ruch, P. AU - Boyer, C. AU - Chichester, C. AU - Tbahriti, I. AU - Geissbuhler, A. AU - Fabry, P. AU - Gobeill, J. AU - Pillet, V. AU - Rebholz-Schuhmann, D. AU - Lovis, C. AU - Veuthey, A. PY - 2007 DA - 2007// TI - Using argumentation to extract key sentences from biomedical abstracts JO - Int J Med Inform VL - 76 UR - https://doi.org/10.1016/j.ijmedinf.2006.05.002 DO - 10.1016/j.ijmedinf.2006.05.002 ID - Ruch2007 ER - TY - CHAP AU - Couto, F. AU - Silva, M. AU - Coutinho, P. PY - 2004 DA - 2004// TI - FIGO: Findings GO Terms in UnStructured Text BT - BioCreative Notebook Papers, CNB ID - Couto2004 ER - TY - JOUR AU - Ruch, P. PY - 2006 DA - 2006// TI - Automatic assignment of biomedical categories: toward a generic approach JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/bti783 DO - 10.1093/bioinformatics/bti783 ID - Ruch2006 ER - TY - CHAP AU - Camon, E. AU - Barrell, D. AU - Dimmer, E. AU - Lee, V. AU - Magrane, M. AU - Maslen, J. AU - Binn, D. AU - Apweiler, R. PY - 2005 DA - 2005// TI - An evaluation of GO annotation retrieval for BioCreAtIvE and GOA BT - BMC Bioinformatics ID - Camon2005 ER - TY - CHAP AU - Bhalotia, G. AU - Nakov, P. AU - Schwartz, A. AU - Hearst, M. PY - 2004 DA - 2004// TI - BioText Team Report for the TREC 2003 Genomics Track BT - TREC-2003 ID - Bhalotia2004 ER - TY - BOOK AU - Mitchell, T. PY - 1997 DA - 1997// TI - Machine Learning ID - Mitchell1997 ER - TY - CHAP AU - Jelier, R. AU - Schuemie, M. AU - van der Eijk, C. AU - Weeber, M. AU - van Mulligen, E. AU - Schijvenaars, B. AU - Mons, B. AU - Kors, J. PY - 2004 DA - 2004// TI - Searching for GeneRIFs: Concept-Based Query Expansion and Bayes Classification BT - TREC-2003 ID - Jelier2004 ER - TY - CHAP AU - Ruch, P. AU - Perret, L. AU - Savoy, J. PY - 2005 DA - 2005// TI - Features Combination for Extracting Gene Functions from MEDLINE BT - ECIR (to appear) ID - Ruch2005 ER - TY - CHAP AU - Kayaalp, M. AU - Aronson, A. AU - Humphrey, S. AU - Ide, N. AU - Tanabe, L. AU - Smith, L. AU - Demner, D. AU - Loane, R. AU - Mork, J. AU - Bodenreider, O. PY - 2004 DA - 2004// TI - Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics BT - TREC-2003 ID - Kayaalp2004 ER - TY - CHAP AU - Stoica, E. AU - Hearst, M. PY - 2006 DA - 2006// TI - Predicting gene functions from text using a cross-species approach BT - Pac Symp Biocomput ID - Stoica2006 ER - TY - JOUR AU - Crangle, C. AU - Cherry, J. M. AU - Hong, E. L. AU - Zbyslaw, A. PY - 2007 DA - 2007// TI - Mining experimental evidence of molecular function claims from the literature JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm495 DO - 10.1093/bioinformatics/btm495 ID - Crangle2007 ER - TY - CHAP AU - Mottaz, A. AU - Yip, Y. L. AU - Ruch, P. AU - Veuthey, A. L. PY - 2008 DA - 2008// TI - Mapping proteins to disease terminologies: from UniProt to MeSH BT - BMC Bioinformatics ID - Mottaz2008 ER - TY - JOUR AU - Natarajan, J. AU - Berrar, D. AU - Dubitzky, W. AU - Hack, C. AU - Zhang, Y. AU - DeSesa, C. AU - van Brocklyn, J. AU - Bremer, E. PY - 2006 DA - 2006// TI - Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-373 DO - 10.1186/1471-2105-7-373 ID - Natarajan2006 ER -