Table 2 Comparison of related tools with RDFScape
Semantic web based | Reasoning | Interactive environment | Integration of ontologies and experimental data | |
|---|---|---|---|---|
RDFSCape | yes | yes | yes | yes |
BioPAX loader | limited (BioPAX only) | no | Yes | yes |
GOlorize | No (but uses OBO ontologies) | No | Yes (advanced layout depending on ontological information) | Yes |
PathwayTools | No | Yes | Yes, advanced | Yes |
BioDASH | Yes | Limited | Limited | Yes |
Ontoviz/OWLViz | Yes | Limited | Yes | No |
Jambalaya | Yes | Limited | Yes | No |