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Table 3 AML/ALL dataset: statistically significant pathways.

From: Reconstructing networks of pathways via significance analysis of their intersections

Pathway

p value

genes

Significant genes

Under/Over representation

Ribosome

6.70E-05

78

10

under

Cell cycle

0.00152

80

40

over

Glycerophospholipid metabolism

0.003631

28

17

over

Neuroactive ligand-receptor interaction

0.004484

211

51

under

Galactose metabolism

0.008409

21

13

over

B cell receptor signaling pathway

0.008725

49

25

over

Aminoacyl-tRNA biosynthesis

0.015056

20

12

over

Pyrimidine metabolism

0.016126

51

25

over

Purine metabolism

0.02202

90

40

over

Glycerolipid metabolism

0.024062

39

20

over

Leukocyte transendothelial migration

0.0245

75

34

over

Histidine metabolism

0.033768

26

14

over

Nitrobenzene degradation

0.03577

3

3

over

Proteasome

0.040852

27

14

over

Reductive carboxylate cycle (CO2 fixation)

0.043013

7

5

over

Protein export

0.043013

7

5

over

Aminophosphonate metabolism

0.043363

5

4

over

Nucleotide sugars metabolism

0.043363

5

4

over

The table shows the significantly over- or under-represented pathways (p < 0.05) for the AML/ALL dataset. For each pathway the p value, the total number of genes, the number of significant genes and the over or under-representation status are shown.