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Table 1 Evaluation of the mapping of 200 UniProtKB/Swiss-Prot disease lines (173 with a reference to OMIM)

From: Mapping proteins to disease terminologies: from UniProt to MeSH

 

Exact match

Partial match

Total

Retrieval

Recall

Precision

Retrieval

Recall

Precision

Retrieval

Recall

Precision

SP

35(17.5%)

35(17.5%)

100.0%

91(45.5%)

73(36.5%)

80.0%

126(63%)

108(54%)

86.0%

OMIM

43(21.5%)

40(20%)

93.0%

84(42%)

68(34%)

81.0%

127(63.5%)

108(54%)

85.0%

SP ∩ OMIM

23(11.5%)

23(11.5%)

100.0%

58(29%)

51(25.5%)

88.0%

93(46.5%)

86(43%)

92.5%

SP OMIM

54(27%)

52(26%)

96.5%

95(47.5%)

76(38%)

80.0%

149(74.5%)

128(64%)

86.0%

  1. SP: UniProtKB/Swiss-Prot
  2. SP ∩ OMIM: both mappings correspond to the same MeSH descriptor.