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Table 1 Evaluation of the mapping of 200 UniProtKB/Swiss-Prot disease lines (173 with a reference to OMIM)

From: Mapping proteins to disease terminologies: from UniProt to MeSH

  Exact match Partial match Total
Retrieval Recall Precision Retrieval Recall Precision Retrieval Recall Precision
SP 35(17.5%) 35(17.5%) 100.0% 91(45.5%) 73(36.5%) 80.0% 126(63%) 108(54%) 86.0%
OMIM 43(21.5%) 40(20%) 93.0% 84(42%) 68(34%) 81.0% 127(63.5%) 108(54%) 85.0%
SP ∩ OMIM 23(11.5%) 23(11.5%) 100.0% 58(29%) 51(25.5%) 88.0% 93(46.5%) 86(43%) 92.5%
SP OMIM 54(27%) 52(26%) 96.5% 95(47.5%) 76(38%) 80.0% 149(74.5%) 128(64%) 86.0%
  1. SP: UniProtKB/Swiss-Prot
  2. SP ∩ OMIM: both mappings correspond to the same MeSH descriptor.