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Table 4 Number of differentially expressed genes in all drug treatment groups

From: Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists

Platforms

IUT : A

IUT : B

IUT : C

 

RIUT

BIUT

RIUT

BIUT

RIUT

BIUT

Applied Biosystems

1160

1011

1143

13%

1008

940

763

Agilent

362

262

525

413

452

159

GE Healthcare

697

528

862

723

639

415

Affymetrix (Site 1)

359

251

502

382

422

184%

175

Affymetrix (Site 2)

524

375

724

556

521

289

  1. α = 0.05 (Nominal # false positive < 230)
  2. IUT A: t1: L_AA vs. L_CTL and t2: L_CFY vs. L_CTL
  3. IUT B: t1: L_RDL vs. L_CTL and t2: L_CFY vs. L_CTL
  4. IUT C: t1: L_AA vs. L_CTL and t2: L_RDL vs. L_CTL