Table 3 Evidences for protein – GO annotation associations in text for Set 3. Comparing newly predicted GO terms (Set 3a) and known GO terms (Set 3b) from UniProtKb/Swiss-Prot with protein – GO annotation associations in Medline using different extraction criteria.
From: Integrating protein-protein interactions and text mining for protein function prediction
Extraction criteria | GO term Set | Recall |
|---|---|---|
Exact & Species | predicted GO terms | 19/88 (22%) |
| Â | known GO terms | 129/283 (46%) |
Relative & Species | predicted GO terms | 21/88 (24%) |
| Â | known GO terms | 164/283 (58%) |
Exact | predicted GO terms | 31/88 (35%) |
| Â | known GO terms | 201/283 (71%) |
Relative | new GO terms | 34/88 (39%) |
| Â | known GO terms | 234/283 (82%) |