Skip to main content

Table 2 Identifying directional relationships in MEDLINE for the gene c-myc.

From: Large-scale directional relationship extraction and resolution

ObjectName

No rel.

ND Rel.

F+

F-

Fn

R+

R-

Rn

Expected

Extracted

Process

          

Anaplasia

6

1

0

0

1

1

0

4

F+/R+

None

Angiogenesis

11

10

1

2

7

1

1

3

F+

F -

Breast cancer

92

12

2

0

44

9

2

40

F+

R+

Cell growth

131

34

19

19

76

6

8

34

F+

Inc.

Cervical carcinoma

22

4

0

0

3

0

0

8

F+

None

DNA Damage

33

7

1

0

14

3

2

11

F+

R+

DNA repair

13

11

0

0

1

1

0

4

F-

None

Medulloblastoma

21

6

4

0

13

1

0

20

F+

F+

Tumorigenesis

80

40

20

6

48

6

4

32

F+

F+

Chemical

          

Rapamycin

4

0

1

0

2

0

1

0

R+

None

Reactive oxygen species

9

5

2

0

4

1

1

10

F+

F+

Valproic acid

1

0

0

0

0

0

2

0

R-

R-

Gene

          

AICDA

4

0

0

0

0

0

0

1

R+

None

AURKA

5

1

0

0

2

0

0

1

R+

None

Calcineurin

0

0

0

1

0

0

0

0

R+

None

CDKN2A

95

37

5

2

26

1

7

42

F -

R -

CREBBP

7

3

0

0

5

1

0

6

R-

None

EPHA2

8

0

1

0

1

0

0

2

F-

None

FBXW7

18

5

0

0

4

4

1

17

R -

R+

HDAC1

1

5

0

0

0

0

0

4

F+

None

HMGCS2

1

0

0

1

0

0

0

1

F-

None

IFN-gamma

2

1

1

0

0

0

1

1

R-

None

JUN

558

28

12

0

71

12

6

75

F -

F+/R+

NDRG2

2

1

0

0

5

0

0

2

F-

None

NFATC1

1

0

0

0

1

2

0

1

R+

R+

PCGF2

4

4

0

0

0

0

0

2

R-

None

PPARG

1

1

0

0

1

0

0

2

F+

None

PRL

15

0

0

0

5

6

1

5

R+

R+

RAC1

5

3

2

1

1

0

0

2

R+

F+

SP1

29

5

0

3

9

4

0

9

R+

R+

STAT5A

6

2

1

0

0

2

0

4

R -

R+

Telomerase

27

5

13

0

9

5

1

8

F+

F+

VEGFA

49

2

0

1

18

0

0

17

F+

None

WRN

1

1

2

0

3

0

0

2

F+

F+

ZBTB16

3

2

0

0

0

0

0

1

R-

None

ZBTB17

24

17

1

8

11

1

3

9

F-

F-

Zfp472

1

2

0

0

0

0

0

1

R-

None

  1. See Table 1 for header explanations. ("Inc." = inconclusive - tied for the highest relation score).