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Figure 7 | BMC Bioinformatics

Figure 7

From: Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

Figure 7

Venn diagrams for comparisons of the significantly associated SNPs identified using the genotype calling results with different calling batch compositions. The numbers in circles are the significantly associated SNPs identified in association analyses using calling results from different batch compositions: black circles for BC1, blue circles for BC2, and red circles for BC3. Numbers in brown represent the associated SNPs shared by all three batch compositions, numbers in green represent the associated SNPs shared only by two batch compositions, and the numbers in other colors are the associated SNPs identified only by the corresponding batch compositions. A: The association analyses results for European versus others. B: The association analyses results for African versus others. C: The association analyses results for Asian versus others.

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