Table 2 MapViewer locus for ESTs of NSP generated contigs
From: Validation of an NSP-based (negative selection pattern) gene family identification strategy
| Putative gene family | Gene group by NSP | Contig | EST accession | MapViewer locus | MapViewer Gene Name |
|---|---|---|---|---|---|
| CAD | GeneB | contig3 | CK121258 | AT4G39330 | AtCAD1 |
| CB074210 | AT4G39330 | AtCAD1 | |||
| GeneC | contig1 | BP561562 | ELI3-1 | AtCAD4 | |
| BP796450 | ELI3-1 | AtCAD4 | |||
| CD530744 | ELI3-1 | AtCAD4 | |||
| RF1 | GeneA | contig1 | AV823314 | ERF1-3 | AteRF1-3 |
| GeneB | contig3 | AV822373 | ERF1-2 | AteRF1-2 | |
| BP803175 | ERF1-2 | AteRF1-2 | |||
| Z18188 | ERF1-2 | AteRF1-2 | |||
| GeneC | contig6 | AV825957 | ERF1-1 | AteRF1-1 | |
| BE845168 | ERF1-1 | AteRF1-1 | |||
| PAL | GeneA | contig1 | 8720101 | PAL1 | AtPAL1 |
| 8736225 | PAL1 | AtPAL1 | |||
| GeneB | contig3 | 8722848 | AT3G10340 | AtPAL4 | |
| 8723431 | AT3G10340 | AtPAL4 | |||
| 8728745 | AT3G10340 | AtPAL4 | |||
| 8730514 | AT3G10340 | AtPAL4 | |||
| 9780248 | AT3G10340 | AtPAL4 | |||
| 9788228 | AT3G10340 | AtPAL4 | |||
| GeneC | contig6 | 8690351 | PAL2 | AtPAL2 | |
| 8724245 | PAL2 | AtPAL2 | |||
| 8725529 | PAL2 | AtPAL2 | |||
| 19869024 | PAL2 | AtPAL2 | |||
| 19869200 | PAL2 | AtPAL2 | |||
| 37426635 | PAL2 | AtPAL2 | |||
| GeneC | contig8 | 9786707 | PAL2 | AtPAL2 | |
| 37426640 | PAL2 | AtPAL2 | |||
| GeneC | contig4 | 8719100 | PAL2 | AtPAL2 | |
| 14580232 | PAL2 | AtPAL2 | |||
| 19855615 | PAL2 | AtPAL2 | |||
| 49165014 | PAL2 | AtPAL2 | |||
| 59667557 | PAL2 | AtPAL2 | |||
| L6 | GeneA | contig1 | 5761694 | AT1G18540 | AtL6A |
| 8724065 | AT1G18540 | AtL6A | |||
| 19802678 | AT1G18540 | AtL6A | |||
| GeneB | contig4 | 19868834 | AT1G74060 | AtL6B | |
| 23303389 | AT1G74060 | AtL6B | |||
| GeneC | Contig6 | 8714872 | AT1G74050 | AtL6C | |
| FtsH | GeneA | contig1 | AV518555 | VAR2 | AtFtsH2 |
| AV558102 | VAR2 | AtFtsH2 | |||
| AV800962 | VAR2 | AtFtsH2 | |||
| BP785237 | VAR2 | AtFtsH2 | |||
| GeneB | contig6 | BP626558 | FTSH8 | AtFtsH8 |