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Table 4 Percent similarity for NSP generated contigs aligned with actual CAD genes

From: Validation of an NSP-based (negative selection pattern) gene family identification strategy

  GeneA GeneB GeneC GeneD
  contig8 contig3 contig1 contig2
AtCAD-1 NSSa 99 NSS NSS
AtCAD-2 99 NSS NSS NSS
AtCAD-3 NSS NSS 78 82
AtCAD-4 NSS 76 100 87
AtCAD-5 NSS 72 84 100
AtCAD-6 79 NSS NSS NSS
AtCAD-7 NSS 78 72 NSS
AtCAD-8 NSS NSS NSS NSS
AtCAD-9 NSS NSS NSS NSS
  1. Representative contigs for 4 putative gene family members, GeneA, GeneB, GeneC, and GeneD identified by the NSP method were aligned with actual Arabidopsis gene family members and percent similarity determined.
  2. a – No significant similarity as returned by bl2seq program.