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Table 4 Percent similarity for NSP generated contigs aligned with actual CAD genes

From: Validation of an NSP-based (negative selection pattern) gene family identification strategy

 

GeneA

GeneB

GeneC

GeneD

 

contig8

contig3

contig1

contig2

AtCAD-1

NSSa

99

NSS

NSS

AtCAD-2

99

NSS

NSS

NSS

AtCAD-3

NSS

NSS

78

82

AtCAD-4

NSS

76

100

87

AtCAD-5

NSS

72

84

100

AtCAD-6

79

NSS

NSS

NSS

AtCAD-7

NSS

78

72

NSS

AtCAD-8

NSS

NSS

NSS

NSS

AtCAD-9

NSS

NSS

NSS

NSS

  1. Representative contigs for 4 putative gene family members, GeneA, GeneB, GeneC, and GeneD identified by the NSP method were aligned with actual Arabidopsis gene family members and percent similarity determined.
  2. a – No significant similarity as returned by bl2seq program.