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Table 6 Percent similarity for NSP generated contigs aligned with actual FtsH genes

From: Validation of an NSP-based (negative selection pattern) gene family identification strategy

 

GeneA

GeneB

 

contig1

contig5

contig3

contig6

AtFtsH1

NSS

71

73

NSS

AtFtsH2

100

97

86

83

AtFtsH3

NSS

78

70

NSS

AtFtsH4

NSS

79

78

NSS

AtFtsH5

NSS

73

73

NSS

AtFtsH6

72

73

69

77

AtFtsH7

NSS

68

73

NSS

AtFtsH8

88

85

99

100

AtFtsH9

NSS

68

NSS

NSS

AtFtsH10

NSS

75

74

NSS

AtFtsH11

NSS

77

77

NSS

AtFtsH12

NSS

NSS

NSS

NSS

  1. Representative contigs for 2 putative gene family members, GeneA and GeneB, identified by the NSP method were aligned with actual Arabidopsis gene family members and percent similarity determined.