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Table 1 Collection data for the samples from which we generated 28 new transcriptomes

From: Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

  Species Description Tissue Collection Location Lat. Long. Depth (m)
1 Chiroteuthis calyx Cephalopod (squid) Adult eye tissue ROV (MBARI) CA, USA 36°69'N 122°05'W 446
2 Euprymna scolopes Cephalopod (squid) Adult eye tissue Hand net Honolulu, HI, USA 21°27'N 157°77'W 0.5
3 Galiteuthis armata Cephalopod (squid) Adult eye tissue ROV (MBARI) CA, USA 36°69'N 122°05'W 556
4 Octopus bimaculoides Cephalopod (octopus) Adult dermal tissue SCUBA Santa Barbara, CA, USA 34°43'N 119°71'W ?
5 Uroteuthis edulis Cephalopod (squid) Adult eye tissue Fishmarket Numazu, Japan 35°08'N 138°86'E ?
6 Vampyroteuthis infernalis Cephalopod (vampire squid) Adult eye tissue ROV (MBARI) CA, USA 36°08'N 122°30'W 1096
7 Asellus aquaticus Arthropod (cave isopod) Adult head Hand net Planina cave, Slovenia 45°82'N 14°25'E 65
8 Asellus aquaticus Arthropod (surface isopod) Embryos and hatchlings Lab colony Planina cave, Slovenia 45°82'N 14°25'E N/A
9 Asellus aquaticus Arthropod (hybrid isopod) Adult head Lab colony Planina cave, Slovenia 45°82'N 14°25'E N/A
10 Asellus aquaticus Arthropod (surface isopod) Adult head Lab colony Planina cave, Slovenia 45°82'N 14°25'E N/A
11 Benthesicymus bartletti Arthropod (shrimp) Adult eye tissue Benthic skimmer Northern Gulf of Mexico 28°48'N 88°12'W 1350
12 Caecidotea bicrenata Arthropod (cave isopod) Adult head Hand net Franklin County, TN, USA 35°15'N 86°10'W 0.1
13 Caecidotea bicrenata Arthropod (cave isopod) Whole embryos Hand net Franklin County, TN, USA 35°15'N 86°10'W 0.1
14 Caecidotea forbesi Arthropod (surface isopod) Adult head Hand net Sewanee, TN, USA 35°22'N 85°97'W 0.5
15 Caecidotea forbesi Arthropod (surface isopod) Whole embryos Hand net Sewanee, TN, USA 35°22'N 85°97'W 0.5
16 Euphilomedes carcharodonta Arthropod (ostracod) Whole embryos Hand net Half Moon Bay, CA, USA 37°29'N 122°29'W 1
17 Hemisquilla californiensis Arthropod (stomatopod, male) Adult eye tissue Dredge Orange County, CA, USA 33°67'N 117°78'W ?
18 Ischnura ramburii Arthropod (damselfly, female) Adult head Hand net Austin, TX, USA 30°28'N 97°78'W N/A
19 Limulus polyphemus Arthropod (horseshoe crab) Adult lateral eye Hand Indian River near Titusville, FL, USA 28°74'N 80°75'W Surface
20 Limulus polyphemus Arthropod (horseshoe crab) Adult median eye Hand Indian River near Titusville, FL, USA 28°74'N 80°75'W Surface
21 Limulus polyphemus Arthropod (horseshoe crab) Adult ventral eye Hand Indian River near Titusville, FL, USA 28°74'N 80°75'W Surface
22 Procambarus alleni Arthropod (crayfish) Adult eye tissue Hand net Fisheating Creek, Glades County, FL, USA 26°90'N 81°24'W Surface
23 Procambarus franzi Arthropod (crayfish) Adult eye tissue Hand net Orange Lake Cave, Marion County, FL, USA Contact Authors Contact Authors Surface
24 Pseudosquilla ciliata Arthropod (stomatopod) Adult eye tissue Dredge Isla Magueyes, Puerto Rico 17°97'N 67°05'W ?
25 Systellaspis debilis Arthropod (shrimp) Adult eye tissue Benthic skimmer Nothern Gulf of Mexico 28°48'N 88°12'W 1350
26 Telebasis salva Arthropod (damselfly) Juvenile head Hand net Austin, TX, USA 30°28'N 97°78'W N/A
27 Tripedalia cystophora Cnidarian (cubozoan) Adult rhopalia Snorkel La Parguera, Puerto Rico 17°58'N 67°04'W Surface
28 Tripedalia cystophora Cnidarian (cubozoan) Whole planula larvae Snorkel La Parguera, Puerto Rico 17°58'N 67°04'W Surface