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Table 1 Threshold values and estimates of AUC-ROC for the proposed approach under different window sizes

From: A statistical approach for 5′ splice site prediction using short sequence motifs and without encoding sequence data

Different window sizes 7 bp 8 bp 9 bp 10 bp 11 bp
(−3 ~ +4) (−2 ~ +6) (−3 ~ +6) (−3 ~ +7) (−4 ~ +7)
Number of TSS 770 1370 1960 2342 2530
Number of FSS 12805 33840 59097 74140 88346
Threshold ( ε ) [−4.00] [−5.63] [−7.16] [−8.83] [−9.97]
AUC-ROC 92.74 93.37 94.43 94.39 93.87
SE 0.006 0.004 0.003 0.003 0.003
  1. (−) indicates from exon side and (+) indicate from intron side excluding GT. Values in the square brackets are the final threshold values.