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Table 3 The number of shared differentially spliced genes detected by the selected methods for the HeatT1 data set

From: Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems

 

DiffSplice

Cuffdiff

DEXSeq

MATS

rDiff-param

SplicingCompass

DiffSplice

48

12

7

6

2

0

Cuffdiff

 

306

27

48

14

1

DEXSeq

  

155

27

37

3

MATS

   

241

16

0

rDiff-param

    

93

0

SplicingCompass

     

31

  1. The table contains the number of significant differential spliced genes that reported by each methods (number on the diagonal) and numbers that are shared with another method.
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BMC Bioinformatics

ISSN: 1471-2105

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