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Table 3 The number of shared differentially spliced genes detected by the selected methods for the HeatT1 data set

From: Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems

  DiffSplice Cuffdiff DEXSeq MATS rDiff-param SplicingCompass
DiffSplice 48 12 7 6 2 0
Cuffdiff   306 27 48 14 1
DEXSeq    155 27 37 3
MATS     241 16 0
rDiff-param      93 0
SplicingCompass       31
  1. The table contains the number of significant differential spliced genes that reported by each methods (number on the diagonal) and numbers that are shared with another method.
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BMC Bioinformatics

ISSN: 1471-2105

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