Table 4 The evaluation of the methods on the seven PCR validated genes
Gene | Found by which methods | AS events |
|---|---|---|
AT1G77180 | DEXSeq, DSGseq, MATS | Alt acceptor in 5’ UTR |
AT1G01490 | None | Retained intron in 5’ UTR |
AT2G02390 | Cufflinks, DEXSeq, DiffSplice, MATS | 4th exon alt acceptor |
AT2G26670 | Cufflinks, MATS | 1st exon alt donor in coding region |
AT3G19720 | Cufflinks, MATS | Intron retention 3rd to last exon |
AT5G26780 | Cufflinks, DEXSeq | Intron retention last exon 3’ UTR |
AT1G09140 | DEXSeq, MATS, rDiff-param | Next to last exon alt acceptor |