Table 2 Data analyzed in this study
From: Rapid evaluation and quality control of next generation sequencing data with FaQCs
Dataset | Source | Platform | Pre-QC | After-QC | ||||
|---|---|---|---|---|---|---|---|---|
# of Reads (bases) | Average length (bp) | Average quality | # of Reads (bases) | Average length (bp) | Average quality | |||
Escherichia coli MG1655 | Illumina* | Illumina MiSeq | 11458940 (1730299940) | 151.00 | 32.32 | 11239533 (1599703670) | 142.33 | 33.70 |
Providencia stuartii 33672 | NCBI SRA SRX687104 | Illumina MiSeq | 26654456 (2692100056) | 101.00 | 29.63 | 20586466 (2006232265) | 97.45 | 33.08 |
Escherichia coli Outbreak strain | NCBI SRA SRX067313 | Ion Torrent PGM | 783097 (79769722) | 101.86 | 18.32 | 435634 (25445098) | 58.41 | 26.03 |
HMP Mock | NCBI SRA SRX055380 SRX055381 | Illumina GAII | 14494884 (1087116300) | 75.00 | 25.13 | 13502777 (922535214) | 68.32 | 28.40 |