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Table 3 The comparison of the computational performance using E.coli MG1655 MiSeq dataset and HMP Mock GAII dataset

From: Rapid evaluation and quality control of next generation sequencing data with FaQCs

E.coli MG1655 MiSeq

FaQCs

FASTX

PRINSEQ

SolexaQA

Parallel Process

1

4

8

12

1

1

1

Memory

192.60 M

354.97 M

568.36 M

739.09 M

74.70 M

4.05G

85.87 M

Wallclock Time

1:59:28

0:36:34

0:26:16

0:14:16

0:31:15

3:03:29

4:20:55

CPU

1:58:22

1:59:59

2:02:43

2:03:10

0:30:27

2:59:57

4:13:07

HMP Mock

FaQCs

FASTX

PRINSEQ

SolexaQA

Parallel Process

1

4

8

12

1

1

1

Memory

189.99 M

341.71 M

573.69 M

738.57 M

39.08 M

16.46G

38.48 M

Wallclock Time

1:16:35

0:25:12

0:17:09

0:12:54

0:17:04

2:47:51

1:29:03

CPU

1:14:53

1:14:49

1:21:49

1:24:22

0:16:21

2:43:26

1:28:23