From: Rapid evaluation and quality control of next generation sequencing data with FaQCs
E.coli MG1655 MiSeq | FaQCs | FASTX | PRINSEQ | SolexaQA | |||
---|---|---|---|---|---|---|---|
Parallel Process | 1 | 4 | 8 | 12 | 1 | 1 | 1 |
Memory | 192.60 M | 354.97 M | 568.36 M | 739.09 M | 74.70 M | 4.05G | 85.87 M |
Wallclock Time | 1:59:28 | 0:36:34 | 0:26:16 | 0:14:16 | 0:31:15 | 3:03:29 | 4:20:55 |
CPU | 1:58:22 | 1:59:59 | 2:02:43 | 2:03:10 | 0:30:27 | 2:59:57 | 4:13:07 |
HMP Mock | FaQCs | FASTX | PRINSEQ | SolexaQA | |||
Parallel Process | 1 | 4 | 8 | 12 | 1 | 1 | 1 |
Memory | 189.99 M | 341.71 M | 573.69 M | 738.57 M | 39.08 M | 16.46G | 38.48 M |
Wallclock Time | 1:16:35 | 0:25:12 | 0:17:09 | 0:12:54 | 0:17:04 | 2:47:51 | 1:29:03 |
CPU | 1:14:53 | 1:14:49 | 1:21:49 | 1:24:22 | 0:16:21 | 2:43:26 | 1:28:23 |