Table 4 Sequencing and alignment properties
From: TE-Tracker: systematic identification of transposition events through whole-genome resequencing
EpiRILs | Number of Reads | -/+ (% of reads) | +/- (% of reads) | +/+ (% of reads) | -/- (% of reads) | Single (% of total) | Unmapped (% of total) | Average Mate-pair coverage (mean read depth) | Median fragment size (bp) |
|---|---|---|---|---|---|---|---|---|---|
439 | 127,172,830 | 27.6 | 3.6 | 1.5 | 1.6 | 9.0 | 53.7 | 22.3 | 4,900 |
MEJ07 | 92,937,978 | 35.2 | 5.3 | 1.4 | 1.4 | 11.8 | 41.9 | 20.8 | 4,900 |
60 | 85,525,387 | 36.0 | 5.2 | 1.4 | 1.4 | 11.2 | 41.5 | 19.5 | 5,200 |
454 | 92,352,477 | 19.0 | 3.1 | 1.1 | 1.1 | 9.0 | 63.8 | 11.2 | 5,300 |
55 | 71,487,300 | 35.9 | 8.0 | 1.8 | 1.8 | 9.4 | 39.9 | 16.3 | 5,300 |