Figure 6From: Masking as an effective quality control method for next-generation sequencing data analysisAlignments for the first false-negative Indel at chromosome X:1,615,135. (a) no quality control – BWA, (b) trimming – BWA, (c) masking – BWA, (d) no quality control – BOWTIE2, (e) trimming – BOWTIE2, and (f) masking – BOWTIE2. See the Figure 3 legend for details on coloring. Sanger sequencing identified the deletion of ‘C’.Back to article page