Table 4 The number of Hawaiian SNPs and the false-negative rate
From: Masking as an effective quality control method for next-generation sequencing data analysis
Aligners | No quality control | Trimming | Masking |
|---|---|---|---|
BWA | 104,858 (6.4%) | 105,355 (6.0%) | 104,775 (6.5%) |
BOWTIE2 | 104,422 (6.8%) | 104,470 (6.8%) | 104,297 (6.9%) |