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Table 1 Execution times of AKE

From: AKE - the Accelerated k-mer Exploration web-tool for rapid taxonomic classification and visualization

Data set

#Sequences

Megabases

Runtime

Runtime

   

( k -mers)

(Assignment)

   

in s

in s

AMD

1183

10.83

0.63

0.43

Cow rumen (bins)

466

34.14

0.71

0.21

Cow rumen (scaffolds)

26042

568.59

13.68

10.4

  1. Measures for typical metagenome data sets.
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BMC Bioinformatics

ISSN: 1471-2105

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