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Table 3 Average type I error rates attained from Nigerian male samples, α = 0.05

From: Comparative evaluation of gene set analysis approaches for RNA-Seq data

 

RPKM

QQN

 

TMM

VOOM

N-stat

0.049

0.045

 

0.044

0.055

WW

0.069

0.062

 

0.058

0.072

KS

0.052

0.052

 

0.048

0.059

ROAST

    

0.033

   

FM

SM

GM

edgeR

  

0.075

0.062

0.119

DESeq

  

0.068

0.059

0.103

eBayes

  

0.059

0.057

0.063