From: An integrated network visualization framework towards metabolic engineering applications
OptFlux visualization plugin | CellDesigner | Cytoscape | VANTED | Paint4Net | CellNet-analyzer | Cobra toolbox | |
---|---|---|---|---|---|---|---|
File formats/standards | |||||||
SBML | ● | ● | ● | ● | ● | ● | |
SBGN | ● | ● | ● | ||||
GML | ● | ● | |||||
XGMML | ● | ● | |||||
KGML | ● | ● | ● | ● | |||
Cobra maps | ● | ● | |||||
Layout algorithms | |||||||
FDL | ● | ● | ● | ● | |||
Hierarchical | ● | ● | ● | ||||
Circular | ● | ● | ● | ||||
Grid | ● | ● | |||||
Organic | ● | ● | |||||
Integration with ME | |||||||
Flux distributions | ● | ● | ● | ● | ● | ● | |
Genetic conditions | ● | ● | |||||
Elementary flux modes | ● | ● | |||||
Simulation comparison | ● | ● | ● | ||||
Other features | |||||||
Layout generation | ● | ● | ● | ● | ● | ● | |
Layout exportation | ● | ● | ● | ● | ● | ● | ● |
Edition | ● | ● | ● | ● | ● | ● | |
Multiple layouts | ● | ● | ● | ||||
Partial layouts | ● | ● | ● | ● | ● | ● | ● |