Table 1 Group-specific CNV patterns detected by SubPatCNV on TCGA ovarian cancer data
From: SubPatCNV: approximate subspace pattern mining for mapping copy-number variations
Chromosome | BP Start | BP Stop | p _value | Gene | Type |
|---|---|---|---|---|---|
2 | 203,309,381 | 203,309,495 | 9.9e-05 | BMPR2 | amp |
5 | 18,404,830 | 18,405,744 | 5.7e-06 | amp | |
7 | 153,041,965 | 153,042,465 | 6.6e-06 | amp | |
4 | 96,394,794 | 96,395,108 | 9.1e-05 | UNC5C | del |
4 | 104,496,565 | 104,496,585 | 4.6e-05 | del | |
4 | 123,047,859 | 123,049,424 | 1.1e-05 | del | |
4 | 10,278,3351 | 102,787,549 | 9.1e-05 | BANK1 | del |
13 | 29,955,805 | 29,955,844 | 7.9e-05 | MTUS2 | del |
13 | 37,798,703 | 37,799,335 | 7.4e-05 | del | |
13 | 50,741,528 | 50,741,888 | 3.7e-05 | DLEU1 | del |
13 | 51,515,940 | 51,516,056 | 7.9e-05 | RNASEH2B | del |
13 | 110,545,737 | 110,546,191 | 7.9e-05 | del | |
21 | 17,086,255 | 17,086,366 | 5.5e-05 | del | |
21 | 24,418,912 | 24,419,862 | 9.1e-05 | del |