Skip to main content

Table 4 Prediction results on complete unlabeled proteins of CollinsPPI wrt

From: Predicting protein functions using incomplete hierarchical labels

Metric

PILL

ProDM

ProWL

LkNN

TPRw

MLR-GL

CIA

Naive

MicroF1

47.05 ±1.24

34.44 ±2.11

37.58 ±1.24

32.06 ±1.21

33.79 ±1.62

28.53 ±0.87

33.59 ±2.19

25.47 ±0.46

MacroF1

29.29 ±3.02

16.60 ±4.67

26.11 ±0.90

20.30 ±1.51

22.74 ±1.96

20.58 ±1.14

23.43 ±1.94

1.97 ±0.04

AvgROC

77.48 ±2.25

64.37 ±1.27

56.97 ±1.08

64.45 ±1.82

61.54 ±1.67

64.29 ±1.08

57.18 ±1.24

49.74 ±1.26

1-RankLoss

82.64 ±0.41

77.90 ±3.66

64.57 ±1.82

50.10 ±2.37

42.49 ±2.02

39.36 ±1.08

64.07 ±3.23

76.60 ±0.67

Fmax

56.57 ±1.12

26.05 ±7.42

16.22 ±1.00

41.60 ±0.67

47.42 ±2.45

40.32 ±0.74

32.19 ±1.96

27.52 ±0.35

  1. FunCat labels.