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Table 4 Prediction results on complete unlabeled proteins of CollinsPPI wrt

From: Predicting protein functions using incomplete hierarchical labels

Metric PILL ProDM ProWL LkNN TPRw MLR-GL CIA Naive
MicroF1 47.05 ±1.24 34.44 ±2.11 37.58 ±1.24 32.06 ±1.21 33.79 ±1.62 28.53 ±0.87 33.59 ±2.19 25.47 ±0.46
MacroF1 29.29 ±3.02 16.60 ±4.67 26.11 ±0.90 20.30 ±1.51 22.74 ±1.96 20.58 ±1.14 23.43 ±1.94 1.97 ±0.04
AvgROC 77.48 ±2.25 64.37 ±1.27 56.97 ±1.08 64.45 ±1.82 61.54 ±1.67 64.29 ±1.08 57.18 ±1.24 49.74 ±1.26
1-RankLoss 82.64 ±0.41 77.90 ±3.66 64.57 ±1.82 50.10 ±2.37 42.49 ±2.02 39.36 ±1.08 64.07 ±3.23 76.60 ±0.67
Fmax 56.57 ±1.12 26.05 ±7.42 16.22 ±1.00 41.60 ±0.67 47.42 ±2.45 40.32 ±0.74 32.19 ±1.96 27.52 ±0.35
  1. FunCat labels.