From: Pollux: platform independent error correction of single and mixed genomes
 | Illumina MiSeq - E. coli | |||
---|---|---|---|---|
 | Errors | Errors | Reads | Run |
Software | corrected (%) | introduced (%) | removed (%) | time (min) |
Pollux | 93.81 | 1.28 | 0.89 | 3.01 |
Quake | 58.78 | 0.05 | 0.92 | 4.09 |
SGA | 78.65 | 0.09 | 1.11 | 15.51 |
BLESS | 83.21 | 0.10 | 0.00 | 0.86 |
Musket | 81.75 | 0.15 | 0.00 | 2.37 |
RACER | 86.59 | 1.60 | 0.00 | 1.07 |
 | Illumina genome analyzer II - S. aureus | |||
 | Errors | Errors | Reads | Run |
Software | corrected (%) | introduced (%) | removed (%) | time (min) |
Pollux | 87.04 | 0.38 | 31.73 | 3.67 |
Quake | 75.30 | 0.10 | 29.81 | 4.81 |
SGA | 47.45 | 0.02 | 10.71 | 14.28 |
BLESS | 55.32 | 0.06 | 0.00 | 0.49 |
Musket | 45.04 | 0.14 | 0.00 | 6.96 |
RACER | 75.76 | 0.28 | 0.00 | 0.68 |
 | Illumina HiSeq - L. pneumophila | |||
 | Errors | Errors | Reads | Run |
Software | corrected (%) | introduced (%) | removed (%) | time (min) |
Pollux | 96.16 | 0.13 | 6.01 | 14.40 |
Quake | 99.66 | 0.00 | 4.25 | 22.25 |
SGA | 84.61 | 0.03 | 3.87 | 73.82 |
BLESS | 87.61 | 0.03 | 0.00 | 3.56 |
Musket | 83.33 | 0.10 | 0.00 | 18.67 |
RACER | 94.09 | 0.16 | 0.00 | 4.14 |
 | Illumina HiSeq - M. tuberculosis | |||
 | Errors | Errors | Reads | Run |
Software | corrected (%) | introduced (%) | removed (%) | time (min) |
Pollux | 69.98 | 0.83 | 6.51 | 4.24 |
Quake | 68.06 | 0.12 | 3.06 | 5.62 |
SGA | 31.99 | 0.16 | 0.46 | 17.75 |
BLESS | 60.01 | 0.13 | 0.00 | 1.04 |
Musket | 44.68 | 0.80 | 0.00 | 5.93 |
RACER | 65.14 | 1.28 | 0.00 | 0.79 |
 | Roche 454 GS Junior - E. coli | |||
 | Errors | Errors | Reads | Run |
Software | corrected (%) | introduced (%) | removed (%) | time (min) |
Pollux | 81.02 | 4.14 | 0.82 | 5.45 |
Quake | 0.21 | 0.00 | 0.07 | 3.62 |
SGA | 8.94 | 3.63 | 1.64 | 5.33 |
BLESS | 34.68 | 1.27 | 0.00 | 0.24 |
Musket | 0.00 | 0.00 | 0.00 | 0.05 |
RACER | 82.03 | 24.27 | 0.00 | 0.36 |
 | Ion torrent PGM - E. coli | |||
 | Errors | Errors | Reads | Run |
Software | corrected (%) | introduced (%) | removed (%) | time (min) |
Pollux | 87.83 | 3.43 | 10.90 | 26.75 |
Quake | 12.35 | 2.03 | 37.60 | 11.11 |
SGA | 5.43 | 1.12 | 0.16 | 55.93 |
BLESS | 22.82 | 0.52 | 0.00 | 1.25 |
Musket | 9.40 | 4.88 | 0.00 | 47.27 |
RACER | 67.86 | 15.95 | 0.00 | 1.64 |