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Table 2 Prediction of repeat regions for a representative set of 15 proteins compared with UniProt annotation, RADAR and ConSole output

From: Identifying tandem Ankyrin repeats in protein structures

Protein name PDB (chain) UniProt annotation RADAR ConSole AnkPred
3ANK 1N0Q (A) - 3-35, 36–68, 69-92 21-52 3-33, 34–67, 68-93
4ANK 1N0R (A) - 1-33, 34–66, 67–99, 100-125 21-52, 53-84 1-33, 34–66, 67–100, 101-126
Protein phosphatase 1 regulatory subunit 12A 1S70 (B) 39-68, 72–101, 105–134, 138–164, 198–227, 231-260 47-73, 77–106, 110–139, 203–232, 236-265 44-74, 75–105, 106–136, 137–167, 175–205, 206–236, 237-267 36-71, 72–104, 105–138, 198–231, 232-267
Mouse GABP α/βdomain 1AWC (B) 5-34, 37–66, 70–99, 103–132, 136-166 13-34, 40–67, 73–100, 106-133 16-47, 48–79, 80-111 5-36, 37–69, 70–103, 104–136, 137-157
TRPV6 Ankyrin repeat domain 2RFA (A) 44-74, 78–107, 116–145, 162–191, 195–236, 238-267 46-91, 93–129, 164-208 117-132 44-77, 78–114, 116–142, 162–194, 195–237, 238-265
Yeast Nas6p complex with proteasome subunit, rpt3 2DZN (A) 1-30, 35–64, 71–100, 106–135, 139–168, 173-203 5-37, 38–70, 74–106, 109–141, 142-175 13-44, 45–76, 77–108, 112–143, 144–175, 176-207 3-34, 35–70, 71–105, 106–138, 139–172, 173–207, 208-228
D34 of human Ankyrin-R 1 N11 (A) 403-432, 436–465, 469–498, 502–531, 535–564, 568–597, 601–630, 634–663, 667–696, 700–729, 733–762, 766-795 406-431, 438–458, 471–487, 504–530, 537–563, 570–596, 603–629, 636–662, 669–695, 702–728, 735-761 415-446, 447–478, 479–510, 511–542, 543–574, 575–606, 607–638, 639–670, 671–702, 703–734, 735–766, 767-802 405-432, 436–458, 469–487, 503–535, 536–567, 568–600, 601–633, 634–666, 667–699, 700–733, 734–766, 767-796
Human gankyrin 1UOH (A) 3-36, 37–69, 70–102, 103–135, 136–168, 169–201, 202-226 49-78, 82–111, 115–144, 148–177, 181-210 23-53, 54–84, 85–115, 116–146, 147–177, 178-208 5-38, 39–71, 72–105, 106–137, 138–170, 171–204, 205-226
P53-53BP2 complex 1YCS (B) 958-990, 991-1023 959-987, 992-1020 337-352, 398-413 926-957, 958–990, 991–1024, 1025-1067
Tumor Suppressor P15(INK4B) 1D9S (A) 5-34, 38–66, 71–100, 104-130 24-44, 56–86, 88-119 78-111 71-104, 105-129
Notch 2F8Y (A) 1927-1956, 1960–1990, 1994–2023, 2027–2056, 2060-2089 1884-1930, 1931–1963, 1964–1997, 1998–2030, 2031–2063, 2064-2096 1919-1950, 1951–1982, 1983–2014, 2015–2046, 2047–2078, 2079-2110 1928-1960, 1961–1994, 1995–2027, 2028–2060, 2061–2094, 2095-2122
S. Cerevisiae Swi6 Ankyrin repeat fragmen 1SW6 (A) 318-346, 347–383, 384–469, 470–498, 499-514 348-391, 467-507 316-323, 324–331, 470-477 -
Human Osteoclast Stimulating Factor 3EHQ (A) 72-101, 105–135, 139-168 94-126, 128-159 83-114, 115–147, 148-180 72-104, 105–138, 139-177
Ankyrin repeat domain of Huntingtin interacting protein 14 3EU9 (A) 89-118, 123–155, 156–188, 189–219, 224-253 64-90, 94–123, 128–157, 161–190, 194–225, 229-252 70-101, 102–133, 134–165, 166–197, 198–229, 230-261 57-88, 89–122, 123–156, 157–189, 190–223, 224–257, 258-281
ANKRA 3SO8 (A) 148-180, 181–213, 214–246, 247–279, 280-313 34-89, 100-155 29-60, 61–92, 93–124, 125-156 149-180, 181–213, 214–246, 247–280, 281-310