Table 4 Example proteins with binding sites in the predicted Ankyrin repeat region
From: Identifying tandem Ankyrin repeats in protein structures
PDB | UniProt | Organism | Predicted Ankyrin region | Binding partner in predicted region obtained from PDBsum |
|---|---|---|---|---|
3HWT | Q9UGP5 | Homo sapiens | 257-291, 292-319 | DNA |
1FO3 | Q9UKM7 | Homo sapiens | 285-319, 324–381, 397–444, 458-504 | Kifunensine and Sulphate |
1KRF | P31723 | Penicillium citrinum | 263-308, 325-381 | Kifunensine, N-Acetyl-D-Glucosamine and Mannose |
2IQC | Q9NPI8 | Homo sapiens | 253-299, 300-341 | Hg (Mercury) |
3Q0P* | Q14671 | Homo sapiens | 894-923, 929–959, 965-995 | RNA |
3K4E* | Q07807 | S. cerevisiae | 539-576, 584-613 | RNA |
3V71* | O44169 | C. elegans | 203-230, 240-270 | RNA |
4F42* | P07174 | R. norvegicus | 19-46, 60-85 | MNB |
2VTB | Q84KJ5 | A. thaliana | 378-408, 412-445 | FAD and MHF |
3FY4 | O48652 | A. thaliana | 343-378, 379-417 | FAD, IMD and MES |
4LCT | P45432 | A. thaliana | 221-252, 262-294 | Sulphate |