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Table 10 The nucleotides distribution in the generated sequences for all datasets

From: ERD: a fast and reliable tool for RNA design including constraints

  Paired   Unpaired   Total
  AU GC GU   A C G U   A C G U
Natural 0.39 0.49 0.12   0.38 0.19 0.17 0.26   0.27 0.22 0.25 0.26
ERD 0.31 0.62 0.07   0.41 0.19 0.17 0.23   0.26 0.26 0.27 0.21
INFO-RNA 0.05 0.90 0.05   0.37 0.20 0.28 0.15   0.15 0.36 0.40 0.09
MODENA 0.13 0.83 0.04   0.83 0.07 0.05 0.06   0.37 0.28 0.28 0.07
NUPACK 0.28 0.72 0.01   0.39 0.22 0.14 0.24   0.24 0.31 0.27 0.18
RNAifold 0.07 0.92 0.02   0.90 0.03 0.04 0.03   0.39 0.27 0.29 0.04
  1. The distribution of nucleotides in paired and unpaired regions are calculated for all existing approaches. Also, the total distribution of nucleotides is presented. The closest values to the natural ones are indicated in bold face.
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BMC Bioinformatics

ISSN: 1471-2105

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