ERD: a fast and reliable tool for RNA design including constraints

BMC Bioinformatics

Table 6 Results for dataset B

	INFO-RNA		MODENA		NUPACK		RNAiFold	ERD		ERD-EC
Index	SC	E _T	SC	E _T	SC	E _T	SC	SC	E _T	SC	E _T
B1	29	7.16	46	131.05	50	22.28	0	50	2.42	50	74.20
B2	26	12.01	40	143.55	50	24.29	0	50	2.24	50	53.52
B3	25	10.50	44	139.07	50	10.58	50	50	2.73	50	48.05
B4	27	12.59	36	171.93	50	23.63	0	50	2.45	50	77.71
B5	25	12.10	48	169.66	50	11.79	50	50	3.13	50	67.24
B6	22	14.42	40	185.99	50	11.87	0	50	2.87	50	77.20
B7	44	2.21	37	173.37	50	24.58	0	50	2.38	50	57.86
B8	26	12.68	45	168.02	50	15.23	50	50	2.48	50	55.80
B9	31	11.27	41	173.59	50	11.38	50	50	2.54	50	85.09
B10	27	9.62	43	171.63	50	13.50	50	50	2.44	50	71.05
B11	44	2.82	40	167.91	50	11.75	0	50	3.13	50	61.63
B12	27	14.53	47	175.10	50	28.69	0	50	2.53	50	70.12

The success count (SC) and expected time (E _T) comparison between the existing approaches for dataset B, including natural sequence constraints. The best results are indicated in bold face.

ISSN: 1471-2105