Skip to main content

Table 7 The average free energy values of sequences generated for dataset B

From: ERD: a fast and reliable tool for RNA design including constraints

Index

Natural

INFO-RNA

MODENA

NUPACK

RNAiFold

ERD

ERD-EC

B1

-72.69

-152.16

-117.89

-112.41

−

-105.87

-87.34

B2

-72.69

-151.71

-120.34

-115.04

−

-106.49

-84.85

B3

-75.19

-155.22

-115.10

-109.54

-108.30

-108.36

-87.45

B4

-69.29

-149.49

-120.21

-113.08

−

-103.32

-84.39

B5

-75.19

-154.02

-105.83

-111.39

-104.20

-109.97

-89.81

B6

-71.49

-152.47

-115.60

-107.05

−

-107.63

-88.61

B7

-75.49

-156.88

-115.35

-118.80

−

-112.18

-91.39

B8

-69.69

-152.14

-113.89

-110.18

-99.61

-104.70

-81.71

B9

-72.19

-149.95

-116.41

-111.26

-111.40

-106.91

-93.78

B10

-73.49

-155.33

-123.21

-111.02

-107.40

-110.94

-88.88

B11

-76.79

-156.54

-123.35

-114.59

−

-114.78

-89.56

B12

-74.49

-154.24

-113.75

-115.51

−

-110.36

-92.38

  1. The average free energy (A E ) values of sequences generated by different approaches and the corresponding natural energy values for dataset B. ERD-EC is related to the ERD when the energy constraint is specified. The closest energy values to the natural ones are indicated in bold face.