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Table 7 The average free energy values of sequences generated for dataset B

From: ERD: a fast and reliable tool for RNA design including constraints

Index Natural INFO-RNA MODENA NUPACK RNAiFold ERD ERD-EC
B1 -72.69 -152.16 -117.89 -112.41 -105.87 -87.34
B2 -72.69 -151.71 -120.34 -115.04 -106.49 -84.85
B3 -75.19 -155.22 -115.10 -109.54 -108.30 -108.36 -87.45
B4 -69.29 -149.49 -120.21 -113.08 -103.32 -84.39
B5 -75.19 -154.02 -105.83 -111.39 -104.20 -109.97 -89.81
B6 -71.49 -152.47 -115.60 -107.05 -107.63 -88.61
B7 -75.49 -156.88 -115.35 -118.80 -112.18 -91.39
B8 -69.69 -152.14 -113.89 -110.18 -99.61 -104.70 -81.71
B9 -72.19 -149.95 -116.41 -111.26 -111.40 -106.91 -93.78
B10 -73.49 -155.33 -123.21 -111.02 -107.40 -110.94 -88.88
B11 -76.79 -156.54 -123.35 -114.59 -114.78 -89.56
B12 -74.49 -154.24 -113.75 -115.51 -110.36 -92.38
  1. The average free energy (A E ) values of sequences generated by different approaches and the corresponding natural energy values for dataset B. ERD-EC is related to the ERD when the energy constraint is specified. The closest energy values to the natural ones are indicated in bold face.