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Table 9 Results for dataset C

From: ERD: a fast and reliable tool for RNA design including constraints

Approach E T SC E ED E SN
INFO-RNA 43.79 32 54.86 28.69
MODENA 165.86 395 27.05 35.73
NUPACK 483.41 336 20.21 38.91
RNAifold 1888.32 272 29.09 31.12
ERD 6.11 401 13.22 39.44
ERD-EC 217.99 386 7.94 39.88
  1. The comparison of expected time (E T ), success count (SC), expected energy distance (E ED ), and expected similarity to the natural sequences (E SN ) between the existing approaches for dataset C. ERD-EC is related to the ERD when the energy constraint is specified. The SC indicates how many sequences are successfully designed. The best results are indicated in bold face.
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BMC Bioinformatics

ISSN: 1471-2105

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