From: Evaluation and improvements of clustering algorithms for detecting remote homologous protein families
TransClust
HiFix
MCL
SCPS
tmin
tmax
sz
s and c
I
c
0.01
100
0.5
0.01, 0.05, 0.1,…, 0.9
0.1, 0.2,…, 6.0
90%, 95%,…, 120%