From: MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding
Type ID | Binary representation | k/m Representation | Gapped n -mer |
---|---|---|---|
0 | 00000 | kkkkk | m |
1 | 00001 | kkkkm | mm |
2 | 00010 | kkkmk | mkm |
3 | 00011 | kkkmm | mmm |
4 | 00100 | kkmkk | mkkm |
5 | 00101 | kkmkm | mkmm |
6 | 00110 | kkmmk | mmkm |
7 | 00111 | kkmmm | mmmm |
8 | 01000 | kmkkk | mkkkm |
9 | 01001 | kmkkm | mkkmm |
10 | 01010 | kmkmk | mkmkm |
11 | 01011 | kmkmm | mkmmm |
12 | 01100 | kmmkk | mmkkm |
13 | 01101 | kmmkm | mmkmm |
14 | 01110 | kmmmk | mmmkm |
15 | 01111 | kmmmm | mmmmm |
16 | 10000 | mkkkk | mkkkkm |
17 | 10001 | mkkkm | mkkkmm |
18 | 10010 | mkkmk | mkkmkm |
19 | 10011 | mkkmm | mkkmmm |
20 | 10100 | mkmkk | mkmkkm |
21 | 10101 | mkmkm | mkmkmm |
22 | 10110 | mkmmk | mkmmkm |
23 | 10111 | mkmmm | mkmmmm |
24 | 11000 | mmkkk | mmkkkm |
25 | 11001 | mmkkm | mmkkmm |
26 | 11010 | mmkmk | mmkmkm |
27 | 11011 | mmkmm | mmkmmm |
28 | 11100 | mmmkk | mmmkkm |
29 | 11101 | mmmkm | mmmkmm |
30 | 11110 | mmmmk | mmmmkm |
31 | 11111 | mmmmm | mmmmmm |